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− | This is an example main configuration file for GBrowse_syn.
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− | It contains information about the alignment (joining) database and the
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− | individual database for of the species in the browser.
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− | [[GBrowse_syn|return to GBrowse_syn]]
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− | <code><pre>
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− | [GENERAL]
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− | description = PECAN alignments for Caenorhabditis
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− |
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− | # The synteny database
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− | join = dbi:mysql:database=pecan;host=localhost;user=nobody
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− |
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− | # symbolic src config file (without the ".conf") Description
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− | source_map = c_elegans c_elegans "C. elegans"
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− | c_remanei c_remanei "C. remanei"
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− | c_briggsae c_briggsae "C. briggsae"
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− | c_brenneri c_brenneri "C. brenneri"
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− | c_japonica c_japonica "C. japonica"
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− |
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− | tmpimages = /gbrowse/tmp
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− | imagewidth = 800
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− | stylesheet = /gbrowse/gbrowse.css
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− | cache time = 1
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− |
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− | # example searches to display
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− | examples = c_elegans X:1050000..1150000
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− | c_briggsae chrX:620000..670000
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− | c_elegans R193.2
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− |
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− |
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− | zoom levels = 5000 10000 25000 50000 100000 200000 400000
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− |
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− | # species-specific databases
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− | [c_elegans]
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− | tracks = CG
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− | color = green
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− |
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− | [c_remanei]
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− | tracks = CG
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− | color = red
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− |
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− | [c_briggsae]
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− | tracks = CG
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− | color = black
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− |
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− | [c_brenneri]
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− | tracks = CG
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− | color = purple
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− |
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− | [c_japonica]
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− | tracks = CG
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− | color = blue
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− |
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− | </pre></code>
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| [[Category:GBrowse syn]] | | [[Category:GBrowse syn]] |