Difference between revisions of "PAG 2015"
From GMOD
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| − | | 10:30 - 10:50 || [https://pag.confex.com/pag/xxiii/webprogram/Paper17188.html W407] - The Future of GMOD and [[Chado]] || [[User:Scott|Scott Cain]] | + | | 10:30 - 10:50 || [https://pag.confex.com/pag/xxiii/webprogram/Paper17188.html W407] - The Future of GMOD and [[Chado]] || [[User:Scott|Scott Cain]] |
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| 10:50 - 11:10 || [https://pag.confex.com/pag/xxiii/webprogram/Paper17190.html W408] - KnowPulse: A Breeder-Focused Web Portal That Integrates Genetics and Genomics of Pulse Crops with Model Genomes || Lacey-Anne Sanderson | | 10:50 - 11:10 || [https://pag.confex.com/pag/xxiii/webprogram/Paper17190.html W408] - KnowPulse: A Breeder-Focused Web Portal That Integrates Genetics and Genomics of Pulse Crops with Model Genomes || Lacey-Anne Sanderson | ||
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| 9:35 - 9:55 || [https://pag.confex.com/pag/xxiii/webprogram/Paper17320.html W068]: Progress on the I5K Pilot at the Baylor College of Medicine Human Genome Sequencing Center || Kim Worley || Esquire | | 9:35 - 9:55 || [https://pag.confex.com/pag/xxiii/webprogram/Paper17320.html W068]: Progress on the I5K Pilot at the Baylor College of Medicine Human Genome Sequencing Center || Kim Worley || Esquire | ||
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| − | | 10:30 - 11:00 || [https://pag.confex.com/pag/xxiii/webprogram/Session2627.html W238]: Simplifying Genome Annotation and Examples of Large-Scale Projects in DNA Barcoding (Red and Blue Lines) || Dave Micklos || California Room | + | | 10:30 - 11:00 || [https://pag.confex.com/pag/xxiii/webprogram/Session2627.html W238]: Simplifying Genome Annotation and Examples of Large-Scale Projects in DNA Barcoding (Red and Blue Lines) || Dave Micklos || California Room |
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| 2:10 - 2:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper16326.html W162]: Citrus Genome DB Updates || Sook Jung || Pacific Salon 6-7 | | 2:10 - 2:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper16326.html W162]: Citrus Genome DB Updates || Sook Jung || Pacific Salon 6-7 | ||
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|10:00 - 11:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper15302.html P346]: PeanutBase: A Resource for Peanut Genetic, Genomic, and Trait Information || Ethalinda Cannon || Poster session | |10:00 - 11:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper15302.html P346]: PeanutBase: A Resource for Peanut Genetic, Genomic, and Trait Information || Ethalinda Cannon || Poster session | ||
| − | - | + | |- |
|10:00 - 11:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper14696.html P654]: Wheat3BMine, a Data Warehouse Dedicated to Wheat Chromosome 3B || Thomas Letellier || Poster session | |10:00 - 11:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper14696.html P654]: Wheat3BMine, a Data Warehouse Dedicated to Wheat Chromosome 3B || Thomas Letellier || Poster session | ||
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|10:00 - 11:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper16142.html P792]: Developing Content for the Arabidopsis Information Portal || Matt Vaughn || Poster session | |10:00 - 11:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper16142.html P792]: Developing Content for the Arabidopsis Information Portal || Matt Vaughn || Poster session | ||
| − | + | |- | |
|10:00 - 11:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper15461.html P852]: TOMATOMICS: An Integrated Database for Omics Information in Tomato || Soichi Ozaki || Poster session | |10:00 - 11:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper15461.html P852]: TOMATOMICS: An Integrated Database for Omics Information in Tomato || Soichi Ozaki || Poster session | ||
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| colspan=3 | '''Wednesday January 14''' | | colspan=3 | '''Wednesday January 14''' | ||
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| − | | 10:30 - 2:30|| [[#GMOD Workshop|GMOD Workshop]] || [[Scott|Scott Cain]] and the GMOD Community || Golden West | + | | 10:30 - 2:30|| [[#GMOD Workshop|GMOD Workshop]] || [[User:Scott|Scott Cain]] and the GMOD Community || Golden West |
|} | |} | ||
[[Category:Conferences]] | [[Category:Conferences]] | ||
Revision as of 22:54, 18 December 2014
There is plenty of GMOD content at the Plant and Animal Genomes (PAG) conference in January 2015. There is a dedicated GMOD Workshop and also posters and presentations from many GMOD users, as well as from developers of GMOD tools.
Contents
Core GMOD Content
There are a number of items focussed on the tools and services that GMOD provides. These are:
| Date | Time | Session | Component(s) | Presenter / Organizer | Location |
|---|---|---|---|---|---|
| Jan. 11 (Sun) | 1:30 - 3:10 | W367: JBrowse Installation and Configuration (Tutorial page) | JBrowse | Scott Cain | California Room |
| Jan. 11 (Sun) | 4:30 - 6:10 | Tripal Database Network and Initiatives | Tripal | Stephen Ficklin and Dorrie Main | California Room |
| Jan 13. (Tue) | 4:30 - 6:10 | W354: Galaxy for SNP and Variant Data Analysis | Galaxy | Dave Clements | California Room |
| Jan. 14 (Wed) | 10:30 - 2:30 | GMOD Workshop | GMOD | Scott Cain | California Room |
Tripal Database Network and Initiatives Workshop
The Tripal Database Network and Initiatives Workshop will be held, Sunday, January 11, in the California Room.
| 4:00-4:30 | W872: Tripal Overview & Future Developments | Stephen Ficklin |
| 4:30 - 5:00 | W873: Extending Tripal for Specialized Display and Management of Diversity and Breeding Data | Lacey-Anne Sanderson |
| 5:00 - 5:15 | W874: GDR/CottonGen: Converting Legacy Sites to Tripal | Sook Jung |
| 5:15 - 5:30 | W875: The i5k Workspace@Nal - a Tripal Based Arthropod Genome Portal | Christopher Childers |
| 5:30 - 5:45 | W876: Tripal within the Arabidopsis Information Portal (AIP) | Vivek Krishnakumar |
| 5:45 - 6:00 | W977: Tripal within the Legumes Genomics Community | Ethalinda Cannon |
| 6:00 - 6:10 | W878: The Hardwood Genomics Database: Current Status and Future Directions after Four Years of Development | Margaret Staton |
GMOD Workshop
The GMOD workshop on Wednesday January 14th will be held in the Golden West room. The schedule is:
| 10:30 - 10:50 | W407 - The Future of GMOD and Chado | Scott Cain |
| 10:50 - 11:10 | W408 - KnowPulse: A Breeder-Focused Web Portal That Integrates Genetics and Genomics of Pulse Crops with Model Genomes | Lacey-Anne Sanderson |
| 11:10 - 11:30 | W409 - Phytozome Population Diversity Visualization in JBrowse: A very large Dataset Case Study | Richard Hayes |
| 11:30 - 11:50 | W410 - JBrowse within the Arabidopsis Information Portal (AIP) Project | Vivek Krishnakumar |
| 11:50 - 12:10 | W411 - Apollo + i5K: Collaborative Curation and Interactive Analysis of Genomes | Monica Munoz-Torres |
| 12:10 - 12:30 | W412 - The Teosinte (Zea mays ssp. parviglumis) de novo Genome Assembly | Arun S. Seetharam |
| 12:30 - 1:30 | Lunch Break | |
| 1:30 | Panel Discussion | TBD |
GMOD Consumers and Providers
There are also many groups who use GMOD components showing posters, and giving presentations and workshops; here is a small selection:
| Time | Title | Presenter | Location |
|---|---|---|---|
| Saturday January 10 | |||
| 9:35 - 9:55 | W068: Progress on the I5K Pilot at the Baylor College of Medicine Human Genome Sequencing Center | Kim Worley | Esquire |
| 10:30 - 11:00 | W238: Simplifying Genome Annotation and Examples of Large-Scale Projects in DNA Barcoding (Red and Blue Lines) | Dave Micklos | California Room |
| 2:10 - 2:30 | W162: Citrus Genome DB Updates | Sook Jung | Pacific Salon 6-7 |
| Sunday January 11 | |||
| 9:00 - 9:20 | W695: Introducing Undergraduate Students to Gene and Genome Structure through Gene Annotation | Brent Buckner | Towne |
| 1:30 - 1:50 | W311: TreeGenes: A Comprehensive Resource for Forest Tree Genomics | Emily Grau | Sunrise |
| 2:30- 2:50 | W421: Overview of the GnpIS Grape Genomics and Genetic Integrative Resource for Diversity Studies | Nacer Mohellibi | Pacific Salon 6-7 |
| 2:45 - 3:00 | C14: CottonGen: The Community Database for Cotton Genomics, Genetics and Breeding Research | Jing Yu | California Room |
| Monday January 12 | |||
| EVEN | |||
| 10:00 - 11:30 | P268: New Data Mining Interfaces at the Bovine Genome Database | Colin Diesh | Poster session |
| 10:00 - 11:30 | P346: PeanutBase: A Resource for Peanut Genetic, Genomic, and Trait Information | Ethalinda Cannon | Poster session |
| 10:00 - 11:30 | P654: Wheat3BMine, a Data Warehouse Dedicated to Wheat Chromosome 3B | Thomas Letellier | Poster session |
| 10:00 - 11:30 | P790: Data Integration for the Plant Research Community: The Arabidopsis Information Portal | Chia-Yi Cheng | Poster session |
| 10:00 - 11:30 | P792: Developing Content for the Arabidopsis Information Portal | Matt Vaughn | Poster session |
| 10:00 - 11:30 | P852: TOMATOMICS: An Integrated Database for Omics Information in Tomato | Soichi Ozaki | Poster session |
| 10:00 - 11:30 | P1010: The i5k Workspace@NAL - Enabling Genomic Data Access, Visualization, and Curation of Arthropod Genomes | Monica Poelchau | Poster session |
| 10:00 - 11:30 | [ P]: | Poster session | |
| 10:00 - 11:30 | [ P]: | Poster session | |
| 10:00 - 11:30 | [ P]: | Poster session | |
| 2:30-2:45 | C13: How to Use GDR, the Genome Database for Rosaceae | Sook Joon | California Room |
| ODD | |||
| 3:00 - 4:30 | P101: High-Throughput SNP Genotyping for Crop Improvement | Michael J. Thomson | Poster session |
| 3:00 - 4:30 | P301: Tools for Phylogenomic Exploration within and Among Clade-Oriented Databases | Alan Cleary | Poster session |
| 3:00 - 4:30 | P953: CottonGen: The Community Database for Cotton Genomics, Genetics and Breeding Research | Jing Yu | Poster session |
| 3:00 - 4:30 | P1029: The Construction of Genome Annotation Database for Liverwort | Hideki Nagasaki | Poster session |
| 3:00 - 4:30 | P1117: An Integrated Annotation Data Warehouse at the Hymenoptera Genome Database | Aditi Tayal | Poster session |
| 3:00 - 4:30 | [ P]: | Poster session | |
| 3:00 - 4:30 | [ P]: | Poster session | |
| 3:00 - 4:30 | [ P]: | Poster session | |
| Tuesday January 13 | |||
| 11:00 - 11:15 | C17: Wheat3BMine, a Data Warehouse Dedicated to Wheat Chromosome 3B | Thomas Letellier | California Room |
| 11:30 - 11:45 | C19: TreeGenes and CartograTree: Tools for Forest Tree Genomics | Emily Grau | California Room |
| 12:30 - 12:45 | C23: Using the Arabidopsis Information Portal | Jason Miller | California Room |
| 4:00 - 6:10 | W354: Galaxy for SNP and Variant Data Analysis | Dave Clements | California Room |
| Wednesday January 14 | |||
| 10:30 - 2:30 | GMOD Workshop | Scott Cain and the GMOD Community | Golden West |
