PAG 2014

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Plant and Animal Genomes conference, aka PAG XXII

There is plenty of GMOD content at the Plant and Animal Genomes (PAG) conference in January 2014. In addition to the day-long workshop on GMOD tools, there are also posters and presentations from many GMOD users, as well as from developers of GMOD tools.

Core GMOD Content

There are a number of items focussed on the tools and services that GMOD provides. These are:

Date Time Session Type Location
11 Jan. (Sat.) 1:30 pm - 3:40 pm Generic Genome Browser Workshop California
13 Jan. (Mon.) 10:00 am - 11:30 am GMOD in the Cloud and GMOD in a Box Poster Grand Exhibit Hall
14 Jan (Tues.) 4:00 pm - 6:10 pm Galaxy for NGS Data Analysis: A Hands-on Workshop Workshop California
15 Jan. (Wed.) 10:30 am - 5:00 pm GMOD Workshop Golden West


All Day GMOD Workshop

The GMOD workshop on Wednesday January 15th will be held in the Golden West room. The schedule will be as follows:

10:30 AM - 11:10 AM W395 - GMOD in the Cloud Scott Cain, GMOD Coordinator
11:10 AM - 11:50 AM W396 - URGI Plant and Fungi Platform: Distributed Resources through GMOD Tools URGI team
11:50 AM - 12:30 PM W397 - Galaxy CloudMan: A Gentle Introduction to Data Analysis on the Cloud Dave Clements Galaxy Project
12:30 PM - 1:10 PM W398 - JBrowse: A Next-Generation Genome Browser Robert Buels, JBrowse developer
13:10 PM - 2:50 PM W399 - MAKER Carson Holt, MAKER developer
3:05 PM - 3:45 PM W400 - WebApollo: A Web-based Sequence Annotation Editor for Distributed Community Annotation Robert Buels, JBrowse developer, Ed Lee WebApollo developer
3:45 PM - 4:25 PM W401 - Tripal Lacey-Anne Sanderson, Stephen P. Ficklin, Tripal developers

GMOD Consumers and Providers

There are also many groups who use GMOD components showing posters, and giving presentations and workshops; here is a small selection:

Date Event Details Location
Saturday 11th January
10:30 am - 12:40 pm DNA Subway: Genomics, DNA Barcoding, and RNA-Seq Made Easy for the Undergraduate Classroom California
10:30 am - 12:40 pm Managing Crop Phenotype Data Pacific Salon 2
1:30 pm - 3:40 pm Computer Demos 1 California
4:00 pm - 6:10 pm Next Generation Genome Annotation and Analysis Towne
Sunday 12th January
10:30 am - 12:40 pm Solanaceae Pacific Salon 1
1:30 pm - 3:40 pm Generic Genome Browser California
4:00 pm - 6:10 pm Coffee Genomics Pacific Salon 4-5 (2nd Floor)
Monday 13th January
7:00 am - 10:00 pm Bioenergy Grand Exhibit Hall
10:00 am - 11:30 am ATGC Transcriptomics: An Application to Explore and Analyze de novo Transcriptomic Data
10:00 am - 11:30 am Bioinformatic Solutions in Forest Genomics: Accessing the Treegenes Database
10:00 am - 11:30 am Bovine Genome Database: Resources for Re-Annotating the Bos taurus Genome
10:00 am - 11:30 am Defining haplotypes in genic and non-genic regions using user specified window size
10:00 am - 11:30 am Genome-Wide DNA Methylation Profile of the Muscle (longissimus dorsi) Tissue in Swine
10:00 am - 11:30 am GMOD in the Cloud and GMOD in a Box
10:00 am - 11:30 am Identification of Candidate Genes at Rvi19 and Rvi20, Two Apple Scab Resistance Loci in the ‘Honeycrisp’ Apple (Malus x domestica)
10:00 am - 11:30 am Integrative System for Gene Family Gathering and Analysis in a Context of Crops’ Stress Response Study
10:00 am - 11:30 am Intermine Webservices for Phytozome
10:00 am - 11:30 am The South Green Bioinformatics Platform
12:50 pm - 3:00 pm Arabidopsis Information Portal & Intl Arabidopsis Informatics Consortium Pacific Salon 6-7 (2nd Floor)
12:50 pm - 3:00 pm Computer Demos 2 California
12:50 pm - 3:00 pm Generation Challenge Program Royal Palm Salon 4,5,6
3:00 pm - 4:30 pm Accessing SGN Genomes through Tools
3:00 pm - 4:30 pm Annotation of the Salix purpurea L. Genome and Gene Families Important for Biomass Production
3:00 pm - 4:30 pm Assembly and Annotation of the Etheostoma tallapoosae Genome
3:00 pm - 4:30 pm Crop Ontology, a Resource for Enabling Access to Breeders' Data
3:00 pm - 4:30 pm Crop>pedia
3:00 pm - 4:30 pm Hymenoptera Genome Database: 2014 Update
3:00 pm - 4:30 pm Liverwort Genome Analysis Using DDBJ Pipeline and Construction of the Database Annotated By the Research Communities
3:00 pm - 4:30 pm Re-Annotation of the Strawberry (Fragaria vesca) Genome
3:00 pm - 4:30 pm The Legume Information System 2014
Tuesday 14th January
10:30 am - 12:40 pm Banana Genomics Pacific Salon 6-7 (2nd Floor)
10:30 am - 12:40 pm SGN Workshop - Solanaceae Genomes, Tools, and the Breeder’s Toolbox Towne
4:00 pm - 6:10 pm Galaxy for NGS Data Analysis: A Hands-on Workshop California
Wednesday 15th January
10:30 am - 5:00 pm GMOD Golden West