This is the new server for GMOD.org. Please let us know if you notice anything weird while it's getting broken in.

PAG 2012

From GMOD
Revision as of 18:58, 2 February 2012 by Clements (Talk | contribs)

Jump to: navigation, search
PAG 2012 Conference http://www.intl-pag.org/}} GMOD had a strong presence at the Plant and Animal Genome Conference (PAG XX). There was again an all-day dedicated GMOD Workshop at PAG. The workshop was in addition to the hands-on GBrowse tutorial that was also offered. As in past years (see 2011, 2010, 2009), there were also many workshops, computer demos, and posters, either about GMOD and GMOD Components, or using GMOD components.


About GMOD Components

Talks that prominently feature GMOD components.

Day Track Time Title & Presenter Components
Saturday
Jan 14
Workshop 10:20-12:30 DNA Subway, Jason Williams, Uwe Hilgert, Sheldon McKay Apollo, GBrowse
Sunday
Jan 15
Computer & Training Workshop 1:30-3:40 The Generic Genome Browser: A Hands on Workshop for Installing, Configuring and Using Your Own GBrowse, Scott Cain. Get the VMware image via ftp GBrowse
Cloud Computing Workshop 1:40-2:10 The Galaxy Platform: running analyses in the cloud, Dannon Baker Galaxy
Monday
Jan 16
Tuesday
Jan 17
Computer & Training Workshop 3:50-6:00 Using Gramene: A Genomics and Genetics Resource for Rice and other Grasses, Ken Youens-Clark, Taner Sen CMap, Pathway Tools
Wednesday
Jan 18
GMOD Tutorial 10:20-5:00, Scott Cain Pacific Salon 3
10:20-10:30 Introduction Scott Cain
10:30-11:30 Galaxy (PDF) Dave Clements
11:30-12:30 MAKER Barry Moore
1:30-2:30 JBrowse (PDF) Robert Buels
2:30-3:30 Using the Generic Synteny Browser (GBrowse_syn) Sheldon McKay
3:45-4:45 Tripal: A Construction Toolkit for Online Genomic Databases Stephen Ficklin

Projects Using GMOD Components

Day Track Time Title & Presenter Components
Saturday
Jan 14
Computer Demos 1:30-3:40
Sunday
Jan 15
Computer Demos 3:50-6:00
Monday
Jan 16
Computer Demos 12:50-3:00
Tuesday
Jan 17
Workshop
Wednesday
Jan 18
Computer Demos 11:35-11:50 MAPHiTS: an efficient workflow for SNP detection, Marc Bras (PDF, Video (no sound)) Galaxy

Posters

Track Time Title & Author Components
EVEN Numbered Poster Session
Monday
Jan 16
10:00-11:30 P698: Developing Tools for Genomic Analysis in a Wide Bulb Onion (Allium cepa L.) Cross, John McCallum Galaxy
P936: DDBJ Sequence Read Archive and a cloud-computing based annotation tool for new-generation sequencing data, Hideki Nagasaki Galaxy
Track Time Title & Author Components
ODD Numbered Poster Session
Monday
Jan 16
3:00-4:30 P987: GMOD in the Cloud, Scott Cain (PDF) Chado, Ergatis, Galaxy, GBrowse, JBrowse, Tripal

See Also