Difference between revisions of "Next Generation Sequencing"
From GMOD
m (Next generation sequencing moved to Next Generation Sequencing) |
m (→Presentations & Posters) |
||
Line 9: | Line 9: | ||
! Where | ! Where | ||
! Content | ! Content | ||
+ | |- | ||
+ | ! [[August 2009 GMOD Meeting#SAMtools for NextGen Sequence Data|SAMtools for NextGen Sequence Data]] | ||
+ | | rowspan="2" | at [[August 2009 GMOD Meeting]], Oxford, UK, August 6-7, 2009 | ||
+ | | An overview of [http://samtools.sourceforge.net SAMtools], a platform agnostic set of programs and file formats for efficiently storing and retrieving short read data. | ||
+ | |- | ||
+ | ! [[August 2009 GMOD Meeting#Visualising NGS Data in GBrowse 2|Visualising NGS Data in GBrowse 2]] | ||
+ | | Describes how to use [[GBrowse]], the Bio::DB::Sam adaptor, and SAMtools to visualize next generation sequence data for whole genome resequencing data. | ||
|- | |- | ||
! [[:Image:AGA_NGS_2009.pdf|Seeing the forest and the trees: visualizing next generation sequence data]] | ! [[:Image:AGA_NGS_2009.pdf|Seeing the forest and the trees: visualizing next generation sequence data]] | ||
Line 24: | Line 31: | ||
! [[:Image:PAG2009NextGenSeqPoster.pdf|Managing Next Generation Sequence Data with GMOD]] | ! [[:Image:PAG2009NextGenSeqPoster.pdf|Managing Next Generation Sequence Data with GMOD]] | ||
| Poster at ''[[PAG 2009|Plant and Animal Genome (PAG 2009)]], San Diego, CA, January 10-14, 2009 | | Poster at ''[[PAG 2009|Plant and Animal Genome (PAG 2009)]], San Diego, CA, January 10-14, 2009 | ||
− | | Using GBrowse for next generation sequence data and population genetics. | + | | Using GBrowse for next generation sequence data and population genetics. |
|} | |} |
Revision as of 18:24, 19 August 2009
This page is under construction. Eventually it will be a hub for all information in the GMOD web site related to next generation sequencing.
Presentations & Posters
Title | Where | Content |
---|---|---|
SAMtools for NextGen Sequence Data | at August 2009 GMOD Meeting, Oxford, UK, August 6-7, 2009 | An overview of SAMtools, a platform agnostic set of programs and file formats for efficiently storing and retrieving short read data. |
Visualising NGS Data in GBrowse 2 | Describes how to use GBrowse, the Bio::DB::Sam adaptor, and SAMtools to visualize next generation sequence data for whole genome resequencing data. | |
Seeing the forest and the trees: visualizing next generation sequence data | at Next Generation Genome Analysis in Non-Model Organisms - An AGA Special Event, University of Connecticut, June 11-13, 2009 | Using GBrowse to visualize next generation sequence data for whole genome resequencing of related strains, and population genetics, followed by an overview of GMOD. |
Using GMOD for evolutionary genomics and next generation sequence data | at the Database tools for evolutionary genomics workshop at SMBE 2009, University of Iowa, June 3-7. | An overview of GMOD and a detailed discussion using GBrowse to visualize next generation sequence data using the Bio-SamTools SAMtools GBrowse adaptor. |
Visualising and Integrating Next Generation Sequence Data using GMOD | at Evolutionary Genetics - The impact of Next generation sequencing technologies in Lutherstadt-Wittenberg, Germany, April 2-4, 2009. | Discusses visualizing NGS data in GBrowse, using pre-SAMtools technologies. Has discussion on if displaying individual reads is useful. |
Managing Next Generation Sequence Data with GMOD | Poster at Plant and Animal Genome (PAG 2009), San Diego, CA, January 10-14, 2009 | Using GBrowse for next generation sequence data and population genetics. |