Difference between revisions of "Main Page"

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Kate Rosenbloom, UCSC Genome Bioinformatics
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SGN abstract: _Associating Solanaceae loci with phenotypes:_
  
1. Intro<br /> - Home Page<br /> - List of genomes<br /> - Hardware<br /> - Usage<br /> - Contributors
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The SOL Genomics Network is a Clade Oriented Database (COD) containing<br /> genomic, genetic and taxonomic information for species in the Euasterid<br /> clade.
  
2. Overview of UCSC Web Tools for Bioinformatics<br /> - Gateway page &amp; Genome Browser<br /> - Table Browser<br /> - ENCODE browser<br /> - Gene Sorter<br /> - Visigene<br /> - BLAT<br /> - Download server
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We have recently added to SGN databases of Solanaceae genes and<br /> phenotypes, with a framework for simple and advanced searches by name,<br /> function, phenotype, map position, sequence, and ontology annotations.<br /> Phenotypes are represented as accessions of populations (mutants and<br /> mapping populations), and may be linked to one or more loci.
 
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3. New features<br /> - Wiki<br /> - Session management<br /> - Custom track management<br /> - Track reordering<br /> - Multiple alignment display<br /> - Genome graphs
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4. GMOD scenarios<br /> A. Search by gene name, view gene page<br /> B. Search for gene by phenotype or GO term
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Revision as of 18:13, 25 January 2007


SGN abstract: _Associating Solanaceae loci with phenotypes:_

The SOL Genomics Network is a Clade Oriented Database (COD) containing
genomic, genetic and taxonomic information for species in the Euasterid
clade.

We have recently added to SGN databases of Solanaceae genes and
phenotypes, with a framework for simple and advanced searches by name,
function, phenotype, map position, sequence, and ontology annotations.
Phenotypes are represented as accessions of populations (mutants and
mapping populations), and may be linked to one or more loci.