Difference between revisions of "MOD"
From GMOD
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|[http://ecocyc.org/ EcoCyc] (see [[Pathway Tools|also]]) | |[http://ecocyc.org/ EcoCyc] (see [[Pathway Tools|also]]) | ||
|- | |- | ||
+ | |[http://ecoliwiki.net EoliWiki] | ||
|[http://www.flybase.org FlyBase] (see [[:Category:FlyBase|also]]) | |[http://www.flybase.org FlyBase] (see [[:Category:FlyBase|also]]) | ||
|[http://fungal.genome.duke.edu/ Fungal Comparative Genomics] | |[http://fungal.genome.duke.edu/ Fungal Comparative Genomics] | ||
− | |||
|- | |- | ||
+ | |[http://genome.kbrin.uky.edu/fungi_tel/browser.html Fungal Telomere Browser] | ||
|[http://genome.ucsc.edu/cgi-bin/hgGateway?org=Chicken Gallus Genome Browser] | |[http://genome.ucsc.edu/cgi-bin/hgGateway?org=Chicken Gallus Genome Browser] | ||
|[http://www.genedb.org/ GeneDB] | |[http://www.genedb.org/ GeneDB] | ||
− | |||
|- | |- | ||
+ | |[http://www.generationcp.org/ Generation Challenge Programme] | ||
|[http://wheat.pw.usda.gov/ GrainGenes] | |[http://wheat.pw.usda.gov/ GrainGenes] | ||
|[http://www.gramene.org Gramene] | |[http://www.gramene.org Gramene] | ||
− | |||
|- | |- | ||
+ | |[http://www.hapmap.org/cgi-perl/gbrowse/ HapMap] | ||
|[http://t1dbase.cimr.cam.ac.uk/cgi-bin/gbrowse/2q33/ Human 2q33] | |[http://t1dbase.cimr.cam.ac.uk/cgi-bin/gbrowse/2q33/ Human 2q33] | ||
|[http://projects.tcag.ca/cgi-bin/duplication/dupbrowse/human_b36 Human Genome Segmental Duplication Database] | |[http://projects.tcag.ca/cgi-bin/duplication/dupbrowse/human_b36 Human Genome Segmental Duplication Database] | ||
− | |||
|- | |- | ||
+ | |[http://influenza.genomics.org.cn/ IVDB] | ||
|[http://magi.plantgenomics.iastate.edu/ MAGI] | |[http://magi.plantgenomics.iastate.edu/ MAGI] | ||
|[http://gmod.mbl.edu/ Marine Biological Lab Organism Databases] | |[http://gmod.mbl.edu/ Marine Biological Lab Organism Databases] | ||
+ | |- | ||
|[http://www.informatics.jax.org/ MGI] (see [[:Category:MGI|also]]) | |[http://www.informatics.jax.org/ MGI] (see [[:Category:MGI|also]]) | ||
− | |||
|[http://projects.tcag.ca/xenodup/gbrowse.php Non-Human Segmental Duplication Database] | |[http://projects.tcag.ca/xenodup/gbrowse.php Non-Human Segmental Duplication Database] | ||
|[http://www.omap.org/ OMAP] | |[http://www.omap.org/ OMAP] | ||
− | |||
|- | |- | ||
+ | |[http://orygenesdb.cirad.fr/ OryGenesDB] | ||
|[http://map.lab.nig.ac.jp/cgi-bin/gbrowse/Oryza_chr8/ Oryza Chromosome 8] | |[http://map.lab.nig.ac.jp/cgi-bin/gbrowse/Oryza_chr8/ Oryza Chromosome 8] | ||
|[http://bioinformatics.ai.sri.com/ptools/ Pathway Tools] (see [[Pathway Tools|also]]) | |[http://bioinformatics.ai.sri.com/ptools/ Pathway Tools] (see [[Pathway Tools|also]]) | ||
− | |||
|- | |- | ||
+ | |[http://paramecium.cgm.cnrs-gif.fr/ ParameciumDB] (see [[ParameciumDB|also]]) | ||
|[http://peanutgenetics.tamu.edu/cmap/ PeanutMap] | |[http://peanutgenetics.tamu.edu/cmap/ PeanutMap] | ||
|[http://mips.gsf.de/cgi-bin/proj/plant/gbrowse/synbrowse PlantsDB] | |[http://mips.gsf.de/cgi-bin/proj/plant/gbrowse/synbrowse PlantsDB] | ||
− | |||
|- | |- | ||
+ | |[http://www.plasmodb.org/ PlasmoDB] | ||
|[http://v2.pseudomonas.com/whats_new.jsp PseudoCAP] | |[http://v2.pseudomonas.com/whats_new.jsp PseudoCAP] | ||
|[http://www.possumbase.org.nz/cgi-bin/gbrowse/mondom4/ PossumBase] | |[http://www.possumbase.org.nz/cgi-bin/gbrowse/mondom4/ PossumBase] | ||
− | |||
|- | |- | ||
+ | |[http://puma.princeton.edu/ PUMAdb] | ||
|[http://rgd.mcw.edu RGD] (see [[:Category:RGD|also]]) | |[http://rgd.mcw.edu RGD] (see [[:Category:RGD|also]]) | ||
|[http://www.yeastgenome.org SGD] (see [[:Category:SGD|also]]) | |[http://www.yeastgenome.org SGD] (see [[:Category:SGD|also]]) | ||
− | |||
|- | |- | ||
+ | |[http://sgdlite.princeton.edu/ SGD Lite] | ||
|[http://smedgd.neuro.utah.edu/ SmedGD] | |[http://smedgd.neuro.utah.edu/ SmedGD] | ||
|[http://www.sgn.cornell.edu/ SOL Genomics Network] (see [[:Category:SGN|also]]) | |[http://www.sgn.cornell.edu/ SOL Genomics Network] (see [[:Category:SGN|also]]) | ||
− | |||
|- | |- | ||
+ | |[http://soybase.agron.iastate.edu/ Soybase] | ||
|[http://soybeangenome.siu.edu/ Soybean Gbrowse Database] | |[http://soybeangenome.siu.edu/ Soybean Gbrowse Database] | ||
|[http://t1dbase.org/cgi-bin/dispatcher.cgi/Welcome/display T1DBase] | |[http://t1dbase.org/cgi-bin/dispatcher.cgi/Welcome/display T1DBase] | ||
− | |||
|- | |- | ||
+ | |[http://www.arabidopsis.org TAIR] (see [[:Category:TAIR|also]]) | ||
|[http://www.ciliate.org/help/Locus.shtml TGD] | |[http://www.ciliate.org/help/Locus.shtml TGD] | ||
|[http://biocomp.dfci.harvard.edu/tgi/ TGI] | |[http://biocomp.dfci.harvard.edu/tgi/ TGI] | ||
− | |||
|- | |- | ||
+ | |[http://www.tigr.org TIGR] | ||
|[http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice MSU Rice Genome Browser] | |[http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice MSU Rice Genome Browser] | ||
|[http://v3-0.toxodb.org/ ToxoDB] | |[http://v3-0.toxodb.org/ ToxoDB] | ||
− | |||
|- | |- | ||
+ | |[http://urgi.versailles.inra.fr/projects/TriAnnot/GBrowse.php TriAnnot BAC Viewer] | ||
|[http://www.vectorbase.org VectorBase] | |[http://www.vectorbase.org VectorBase] | ||
|[http://wfleabase.org/ wFleaBase] | |[http://wfleabase.org/ wFleaBase] | ||
− | |||
|- | |- | ||
+ | |[http://www.wormbase.org WormBase] (see [[:Category:WormBase|also]]) | ||
|[http://www.xanthusbase.org/ XanthusBase] | |[http://www.xanthusbase.org/ XanthusBase] | ||
|[http://www.xenbase.org/ Xenbase] | |[http://www.xenbase.org/ Xenbase] |
Revision as of 00:04, 19 July 2009
Model Organism Databases are repositories for information on those organisms with a wealth of biological data that make them attractive to study as models of other species – including humans – that are more difficult to study directly [1]. Historically, these model organism databases include the handful of species with extensive genomic research data, such as the NIH model organisms.
The acronym has been extended to include Many organism and My organism databases, so that the MOD in GMOD applies to almost all organism/genome database projects.
GMOD Participating databases
The following databases/organizations are contributing to and/or adopting GMOD components, as of early 2007. See GMOD Users for a more detailed list.