Difference between revisions of "MOD"

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'''M'''odel '''O'''rganism '''D'''atabases are repositories for information on
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[[pr03mb4]] was here to winz
those organisms with a wealth of biological data that make them
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attractive to study as models of other
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species – including humans – that are more difficult to study directly
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[http://genome.wellcome.ac.uk/doc_WTD020803.html].
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Historically, these model organism databases include the handful of species with
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extensive genomic research data, such as the
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[http://www.nih.gov/science/models/ NIH model organisms].
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The acronym has been extended to include '''Many''' organism and '''My''' organism databases,
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so that the MOD in GMOD applies to almost all organism/genome database
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projects.
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=GMOD Participating databases=
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The following databases/organizations are contributing to and/or adopting GMOD components, as of early 2007.  See [[GMOD Users]] for a more detailed list.
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{|
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|-
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|[http://crfb.univ-mrs.fr/ciona-bin/gbrowse/intestinalis/ ANISEED]
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|[http://gmod.mbl.edu/perl/site/antonospora01 AntonosporaDB]
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|[http://atidb.org ATIDB]
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|-
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|[http://racerx00.tamu.edu/bee_resources.html BeeBase]
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|[http://www.bioinformatics.ksu.edu/BeetleBase/ BeetleBase]
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|[http://bovinegenome.org/ BGD]
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|-
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|[http://www.biohealthbase.org/GSearch/ BioHealthBase]
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|[http://bovineqtl.tamu.edu Bovine QTL Viewer]
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|[http://racerx00.tamu.edu/cgi-test/searchCattleDatabase.html Cattle EST Gene Family Database]
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|-
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|[http://www.candidagenome.org/ CGD]
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|[http://www.yandell-lab.org/cgl/ CGL]
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|[http://www.chromdb.org/ ChromDB ]
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|-
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|[http://www.chr7.org/cgi-bin/gbrowse/gbrowse/chr7_v2 Chromosome 7 Annotation Project]
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|[http://rulai.cshl.edu/cshlmpd/credit.html CSHLmpd]
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|[http://projects.tcag.ca/variation/cgi-bin/gbrowse/hg17 Database of Genomic Variants]
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|-
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|[http://www.dictybase.org DictyBase] (see [[:Category:DictyBase|also]])
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|[http://insects.eugenes.org/DroSpeGe/ DroSpeGe]
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|[http://ecocyc.org/ EcoCyc] (see [[Pathway Tools|also]])
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|-
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|[http://www.flybase.org FlyBase] (see [[:Category:FlyBase|also]])
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|[http://fungal.genome.duke.edu/ Fungal Comparative Genomics]
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|[http://genome.kbrin.uky.edu/fungi_tel/browser.html Fungal Telomere Browser]
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|-
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|[http://genome.ucsc.edu/cgi-bin/hgGateway?org=Chicken Gallus Genome Browser]
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|[http://www.genedb.org/ GeneDB]
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|[http://www.generationcp.org/ Generation Challenge Programme]
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|-
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|[http://wheat.pw.usda.gov/ GrainGenes]
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|[http://www.gramene.org Gramene]
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|[http://www.hapmap.org/cgi-perl/gbrowse/ HapMap]
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|-
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|[http://t1dbase.cimr.cam.ac.uk/cgi-bin/gbrowse/2q33/ Human 2q33]
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|[http://projects.tcag.ca/cgi-bin/duplication/dupbrowse/human_b36 Human Genome Segmental Duplication Database]
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|[http://influenza.genomics.org.cn/ IVDB]
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|-
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|[http://magi.plantgenomics.iastate.edu/ MAGI]
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|[http://gmod.mbl.edu/  Marine Biological Lab Organism Databases]
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|[http://www.informatics.jax.org/ MGI] (see [[:Category:MGI|also]])
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|-
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|[http://projects.tcag.ca/xenodup/gbrowse.php Non-Human Segmental Duplication Database]
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|[http://www.omap.org/ OMAP]
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|[http://orygenesdb.cirad.fr/ OryGenesDB]
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|-
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|[http://map.lab.nig.ac.jp/cgi-bin/gbrowse/Oryza_chr8/ Oryza Chromosome 8]
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|[http://bioinformatics.ai.sri.com/ptools/ Pathway Tools] (see [[Pathway Tools|also]])
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|[http://paramecium.cgm.cnrs-gif.fr/ ParameciumDB] (see [[ParameciumDB|also]])
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|-
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|[http://peanutgenetics.tamu.edu/cmap/ PeanutMap]
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|[http://mips.gsf.de/cgi-bin/proj/plant/gbrowse/synbrowse PlantsDB]
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|[http://www.plasmodb.org/ PlasmoDB]
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|-
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|[http://v2.pseudomonas.com/whats_new.jsp PseudoCAP]
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|[http://www.possumbase.org.nz/cgi-bin/gbrowse/mondom4/ PossumBase]
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|[http://puma.princeton.edu/ PUMAdb]
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|-
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|[http://rgd.mcw.edu RGD] (see [[:Category:RGD|also]])
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|[http://www.yeastgenome.org SGD] (see [[:Category:SGD|also]])
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|[http://sgdlite.princeton.edu/ SGD Lite]
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|-
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|[http://planaria.neuro.utah.edu/tools/tools.php SmedDB]
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|[http://www.sgn.cornell.edu/ SOL Genomics Network] (see [[:Category:SGN|also]])
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|[http://soybase.agron.iastate.edu/ Soybase]
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|-
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|[http://soybeangenome.siu.edu/ Soybean Gbrowse Database]
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|[http://t1dbase.org/cgi-bin/dispatcher.cgi/Welcome/display T1DBase]
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|[http://www.arabidopsis.org TAIR] (see [[:Category:TAIR|also]])
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|-
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|[http://www.ciliate.org/help/Locus.shtml TGD]
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|[http://biocomp.dfci.harvard.edu/tgi/ TGI]
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|[http://www.tigr.org TIGR]
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|-
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|[http://rice.tigr.org/tigr-scripts/osa1/gbrowse/ricegenomebrowser TIGR Rice Genome Browser]
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|[http://v3-0.toxodb.org/ ToxoDB]
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|[http://urgi.versailles.inra.fr/projects/TriAnnot/GBrowse.php TriAnnot BAC Viewer]
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|-
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|[http://www.vectorbase.org VectorBase]
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|[http://wfleabase.org/ wFleaBase]
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|[http://www.wormbase.org WormBase] (see [[:Category:WormBase|also]])
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|-
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|[http://www.xanthusbase.org/ XanthusBase]
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|[http://www.xenbase.org/ Xenbase]
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|-
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|}
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= See also =
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* [[GMOD Users]]
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* [[Standard URL]]
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* [http://en.wikipedia.org/wiki/Generic_Model_Organism_Database Wikipedia GMOD]
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[[Category:FAQ]]
 
[[Category:FAQ]]
 
[[Category:GMOD Community]]
 
[[Category:GMOD Community]]

Revision as of 01:27, 25 May 2008

pr03mb4 was here to winz