Difference between revisions of "JavaSEAN"

From GMOD
Jump to: navigation, search
(New page: ; '''Description'''<br /> : The javaSEAN tool is a standalone java application which was developed<br /> to facilitate integration and curation of sequence-level data from the<br /> nucl...)
 
m
Line 1: Line 1:
 +
==Description==
  
 +
The javaSEAN tool is a standalone Java application which was developed to facilitate integration and curation of sequence-level data from the nucleotide sequence databases and the Drosophila literature; it also provides a means of graphically presenting these data. Using javaSEAN, curators create Annotated Reference Gene Sequence (ARGS) records, which tether various types of mappable data to a genomic sequence, including gene structure, mutation sites, polymorphic sites, insertion sites, regulatory elements, and rescue fragments.
  
; '''Description'''<br />
 
: The javaSEAN tool is a standalone java application which was developed<br /> to facilitate integration and curation of sequence-level data from the<br /> nucleotide sequence databases and the Drosophila literature; it also<br /> provides a means of graphically presenting these data. Using javaSEAN,<br /> curators create Annotated Reference Gene Sequence (ARGS) records,<br /> which tether various types of mappable data to a genomic sequence,<br /> including gene structure, mutation sites, polymorphic sites, insertion<br /> sites, regulatory elements, and rescue fragments.
 
  
; '''Demo &amp; Screenshots'''<br />
+
==Demo & Screenshots==
: [[screenshot]]
+
  
; '''Requirements'''<br />
 
: [[Requirements]]
 
  
; '''Documentation'''<br />
 
: [[Description]]<br />[[Architecture Diagram]]<br />[[Architecture Text]]<br />[[Setup]]<br />[[Sample Mapfile]]
 
  
; '''Contact'''<br />
+
==Requirements==
: [[smutniak@morgan.harvard.edu]]
+
  
; '''Downloads'''<br />
+
 
: [http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/gmod/javaSean/ from cvs]
+
 
 +
==Documentation==
 +
 
 +
 
 +
 
 +
==Contact==
 +
 
 +
smutniak@morgan.harvard.edu
 +
 
 +
 
 +
==Downloads==
 +
 
 +
[http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/gmod/javaSean/ From CVS]
  
  
  
{| id="attachments"
 
! Attachment
 
! Size
 
|- class="dark"
 
|
 
 
[http://www.gmod.org/files/Architecture.gif Architecture.gif]
 
[http://www.gmod.org/files/Architecture.gif Architecture.gif]
| 29.02 KB
 
|- class="light"
 
|
 
 
[http://www.gmod.org/files/Architecture.txt Architecture.txt]
 
[http://www.gmod.org/files/Architecture.txt Architecture.txt]
| 10.15 KB
 
|- class="dark"
 
|
 
 
[http://www.gmod.org/files/Description.txt Description.txt]
 
[http://www.gmod.org/files/Description.txt Description.txt]
| 36.3 KB
 
|- class="light"
 
|
 
 
[http://www.gmod.org/files/javaSeanScreen.jpg javaSeanScreen.jpg]
 
[http://www.gmod.org/files/javaSeanScreen.jpg javaSeanScreen.jpg]
| 199.19 KB
 
|- class="dark"
 
|
 
 
[http://www.gmod.org/files/mapfile-sample.rpt mapfile-sample.rpt]
 
[http://www.gmod.org/files/mapfile-sample.rpt mapfile-sample.rpt]
| 819 bytes
 
|- class="light"
 
|
 
 
[http://www.gmod.org/files/Requirements.txt Requirements.txt]
 
[http://www.gmod.org/files/Requirements.txt Requirements.txt]
| 3.11 KB
 
|- class="dark"
 
|
 
 
[http://www.gmod.org/files/Setup.txt Setup.txt]
 
[http://www.gmod.org/files/Setup.txt Setup.txt]
| 3.81 KB
+
 
|}
+
[[Category:Unsupported]]

Revision as of 18:41, 11 February 2007

Description

The javaSEAN tool is a standalone Java application which was developed to facilitate integration and curation of sequence-level data from the nucleotide sequence databases and the Drosophila literature; it also provides a means of graphically presenting these data. Using javaSEAN, curators create Annotated Reference Gene Sequence (ARGS) records, which tether various types of mappable data to a genomic sequence, including gene structure, mutation sites, polymorphic sites, insertion sites, regulatory elements, and rescue fragments.


Demo & Screenshots

Requirements

Documentation

Contact

smutniak@morgan.harvard.edu


Downloads

From CVS


Architecture.gif Architecture.txt Description.txt javaSeanScreen.jpg mapfile-sample.rpt Requirements.txt Setup.txt