Difference between revisions of "JavaSEAN"
From GMOD
(New page: ; '''Description'''<br /> : The javaSEAN tool is a standalone java application which was developed<br /> to facilitate integration and curation of sequence-level data from the<br /> nucl...) |
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+ | ==Description== | ||
+ | The javaSEAN tool is a standalone Java application which was developed to facilitate integration and curation of sequence-level data from the nucleotide sequence databases and the Drosophila literature; it also provides a means of graphically presenting these data. Using javaSEAN, curators create Annotated Reference Gene Sequence (ARGS) records, which tether various types of mappable data to a genomic sequence, including gene structure, mutation sites, polymorphic sites, insertion sites, regulatory elements, and rescue fragments. | ||
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− | + | ==Demo & Screenshots== | |
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− | + | ==Requirements== | |
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+ | ==Documentation== | ||
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+ | ==Contact== | ||
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+ | smutniak@morgan.harvard.edu | ||
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+ | ==Downloads== | ||
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+ | [http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/gmod/javaSean/ From CVS] | ||
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[http://www.gmod.org/files/Architecture.gif Architecture.gif] | [http://www.gmod.org/files/Architecture.gif Architecture.gif] | ||
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[http://www.gmod.org/files/Architecture.txt Architecture.txt] | [http://www.gmod.org/files/Architecture.txt Architecture.txt] | ||
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[http://www.gmod.org/files/Description.txt Description.txt] | [http://www.gmod.org/files/Description.txt Description.txt] | ||
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[http://www.gmod.org/files/javaSeanScreen.jpg javaSeanScreen.jpg] | [http://www.gmod.org/files/javaSeanScreen.jpg javaSeanScreen.jpg] | ||
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[http://www.gmod.org/files/mapfile-sample.rpt mapfile-sample.rpt] | [http://www.gmod.org/files/mapfile-sample.rpt mapfile-sample.rpt] | ||
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[http://www.gmod.org/files/Requirements.txt Requirements.txt] | [http://www.gmod.org/files/Requirements.txt Requirements.txt] | ||
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[http://www.gmod.org/files/Setup.txt Setup.txt] | [http://www.gmod.org/files/Setup.txt Setup.txt] | ||
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− | + | [[Category:Unsupported]] |
Revision as of 18:41, 11 February 2007
Description
The javaSEAN tool is a standalone Java application which was developed to facilitate integration and curation of sequence-level data from the nucleotide sequence databases and the Drosophila literature; it also provides a means of graphically presenting these data. Using javaSEAN, curators create Annotated Reference Gene Sequence (ARGS) records, which tether various types of mappable data to a genomic sequence, including gene structure, mutation sites, polymorphic sites, insertion sites, regulatory elements, and rescue fragments.
Demo & Screenshots
Requirements
Documentation
Contact
smutniak@morgan.harvard.edu
Downloads
Architecture.gif Architecture.txt Description.txt javaSeanScreen.jpg mapfile-sample.rpt Requirements.txt Setup.txt