Difference between revisions of "JavaSEAN"
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(New page: ; '''Description'''<br /> : The javaSEAN tool is a standalone java application which was developed<br /> to facilitate integration and curation of sequence-level data from the<br /> nucl...) |
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+ | The javaSEAN tool is a standalone Java application which was developed to facilitate integration and curation of sequence-level data from the nucleotide sequence databases and the Drosophila literature; it also provides a means of graphically presenting these data. Using javaSEAN, curators create Annotated Reference Gene Sequence (ARGS) records, which tether various types of mappable data to a genomic sequence, including gene structure, mutation sites, polymorphic sites, insertion sites, regulatory elements, and rescue fragments. | ||
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− | + | ==Demo & Screenshots== | |
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− | + | ==Requirements== | |
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+ | ==Documentation== | ||
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+ | ==Contact== | ||
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+ | haiyan@morgan.harvard.edu | ||
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+ | ==Downloads== | ||
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+ | [http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/gmod/javaSean/ From CVS] | ||
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[http://www.gmod.org/files/Architecture.gif Architecture.gif] | [http://www.gmod.org/files/Architecture.gif Architecture.gif] | ||
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[http://www.gmod.org/files/Architecture.txt Architecture.txt] | [http://www.gmod.org/files/Architecture.txt Architecture.txt] | ||
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[http://www.gmod.org/files/Description.txt Description.txt] | [http://www.gmod.org/files/Description.txt Description.txt] | ||
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[http://www.gmod.org/files/javaSeanScreen.jpg javaSeanScreen.jpg] | [http://www.gmod.org/files/javaSeanScreen.jpg javaSeanScreen.jpg] | ||
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[http://www.gmod.org/files/mapfile-sample.rpt mapfile-sample.rpt] | [http://www.gmod.org/files/mapfile-sample.rpt mapfile-sample.rpt] | ||
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[http://www.gmod.org/files/Requirements.txt Requirements.txt] | [http://www.gmod.org/files/Requirements.txt Requirements.txt] | ||
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[http://www.gmod.org/files/Setup.txt Setup.txt] | [http://www.gmod.org/files/Setup.txt Setup.txt] | ||
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Latest revision as of 23:45, 25 January 2008
The item described in this page is not (or is no longer) supported by the GMOD project.
This page is included only for reference purposes.
The javaSEAN tool is a standalone Java application which was developed to facilitate integration and curation of sequence-level data from the nucleotide sequence databases and the Drosophila literature; it also provides a means of graphically presenting these data. Using javaSEAN, curators create Annotated Reference Gene Sequence (ARGS) records, which tether various types of mappable data to a genomic sequence, including gene structure, mutation sites, polymorphic sites, insertion sites, regulatory elements, and rescue fragments.
Demo & Screenshots
Requirements
Documentation
Contact
haiyan@morgan.harvard.edu
Downloads
Architecture.gif Architecture.txt Description.txt javaSeanScreen.jpg mapfile-sample.rpt Requirements.txt Setup.txt