Difference between revisions of "JavaSEAN"

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(New page: ; '''Description'''<br /> : The javaSEAN tool is a standalone java application which was developed<br /> to facilitate integration and curation of sequence-level data from the<br /> nucl...)
 
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The javaSEAN tool is a standalone Java application which was developed to facilitate integration and curation of sequence-level data from the nucleotide sequence databases and the Drosophila literature; it also provides a means of graphically presenting these data. Using javaSEAN, curators create Annotated Reference Gene Sequence (ARGS) records, which tether various types of mappable data to a genomic sequence, including gene structure, mutation sites, polymorphic sites, insertion sites, regulatory elements, and rescue fragments.
  
; '''Description'''<br />
 
: The javaSEAN tool is a standalone java application which was developed<br /> to facilitate integration and curation of sequence-level data from the<br /> nucleotide sequence databases and the Drosophila literature; it also<br /> provides a means of graphically presenting these data. Using javaSEAN,<br /> curators create Annotated Reference Gene Sequence (ARGS) records,<br /> which tether various types of mappable data to a genomic sequence,<br /> including gene structure, mutation sites, polymorphic sites, insertion<br /> sites, regulatory elements, and rescue fragments.
 
  
; '''Demo &amp; Screenshots'''<br />
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==Demo & Screenshots==
: [[screenshot]]
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; '''Requirements'''<br />
 
: [[Requirements]]
 
  
; '''Documentation'''<br />
 
: [[Description]]<br />[[Architecture Diagram]]<br />[[Architecture Text]]<br />[[Setup]]<br />[[Sample Mapfile]]
 
  
; '''Contact'''<br />
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==Requirements==
: [[smutniak@morgan.harvard.edu]]
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; '''Downloads'''<br />
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: [http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/gmod/javaSean/ from cvs]
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==Documentation==
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==Contact==
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haiyan@morgan.harvard.edu
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==Downloads==
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[http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/gmod/javaSean/ From CVS]
  
  
  
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[http://www.gmod.org/files/javaSeanScreen.jpg javaSeanScreen.jpg]
 
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[http://www.gmod.org/files/mapfile-sample.rpt mapfile-sample.rpt]
 
[http://www.gmod.org/files/mapfile-sample.rpt mapfile-sample.rpt]
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[http://www.gmod.org/files/Requirements.txt Requirements.txt]
 
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[http://www.gmod.org/files/Setup.txt Setup.txt]
 
[http://www.gmod.org/files/Setup.txt Setup.txt]
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Latest revision as of 23:45, 25 January 2008

The item described in this page is not (or is no longer) supported by the GMOD project.
This page is included only for reference purposes.

The javaSEAN tool is a standalone Java application which was developed to facilitate integration and curation of sequence-level data from the nucleotide sequence databases and the Drosophila literature; it also provides a means of graphically presenting these data. Using javaSEAN, curators create Annotated Reference Gene Sequence (ARGS) records, which tether various types of mappable data to a genomic sequence, including gene structure, mutation sites, polymorphic sites, insertion sites, regulatory elements, and rescue fragments.


Demo & Screenshots

Requirements

Documentation

Contact

haiyan@morgan.harvard.edu

Downloads

From CVS


Architecture.gif Architecture.txt Description.txt javaSeanScreen.jpg mapfile-sample.rpt Requirements.txt Setup.txt