JBrowse2

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JBrowse 2 logo
Status
  • Mature release
  • Development: active
  • Support: active
Licence
{{{PAGENAME}}} is open source

Apache 2

Resources


About JBrowse 2

JBrowse is a genome browser with a fully dynamic AJAX interface, continuing development as the successor to GBrowse and JBrowse. It is very fast and scales well to large datasets. JBrowse is javascript-based and does almost all of its work directly in the user's web browser, with minimal requirements for the server.

Features

  • Fast, smooth scrolling and zooming. Explore your genome with unparalleled speed.
  • Scales easily to multi-gigabase genomes and deep-coverage sequencing.
  • Supports GFF3, BED, FASTA, Wiggle, BigWig, BAM, VCF (with tabix), REST, and more. BAM, BigWig, and VCF data are displayed directly from the compressed binary file with no conversion needed.
  • Very light server resource requirements. In fact, JBrowse has no back-end server code, just tools for formatting data files to be read directly over HTTP. Serve huge datasets from a single low-cost cloud instance.


Visit the JBrowse2 website.


Downloads







Contacts and Mailing Lists

Please direct questions and inquiries regarding JBrowse to the mailing lists below.Requests for help should be directed to gmod-ajax@lists.sourceforge.net.

Mailing List Link Description Archive(s)
JBrowse gmod-ajax JBrowse help and general questions. Nabble (2010/05+), Sourceforge
jbrowse-dev JBrowse development discussions. Nabble (2011/08+)
gmod-ajax@lists.sourceforge.net




More on JBrowse 2

This page is under active development

Retrieved from "http://gmod.org/mediawiki/index.php?title=JBrowse2&oldid=27956"
Facts about "JBrowse2"RDF feed
Available on platformweb +
Has URLhttps://jbrowse.org/jb2/docs/quickstart_web +, http://jbrowse.org +, http://twitter.com/usejbrowse +, https://github.com/GMOD/jbrowse-components/ +, http://jbrowse.org/demos + and http://genomesunzipped.org/jbrowse +
Has descriptionJBrowse is a genome browser with a fully d … JBrowse is a genome browser with a fully dynamic AJAX interface, continuing development as the successor to GBrowse and JBrowse. It is very fast and scales well to large datasets. JBrowse is javascript-based and does almost all of its work directly in the user's web browser, with minimal requirements for the server.

Features[edit]

  • Fast, smooth scrolling and zooming. Explore your genome with unparalleled speed.
  • Scales easily to multi-gigabase genomes and deep-coverage sequencing.
  • Supports GFF3, BED, FASTA, Wiggle, BigWig, BAM, VCF (with tabix), REST, and more. BAM, BigWig, and VCF data are displayed directly from the compressed binary file with no conversion needed.
  • Very light server resource requirements. In fact, JBrowse has no back-end server code, just tools for formatting data files to be read directly over HTTP. Serve huge datasets from a single low-cost cloud instance.ets from a single low-cost cloud instance. +
Has development statusactive +
Has input formatGFF3 +, BED +, FASTA +, WIG +, BedGraph +, Bio::DB::* +, UCSC +, Wiggle +, BigWig + and BAM +
Has licenceApache 2 +
Has logoJbrowse2_logo.png +
Has software maturity statusmature +
Has support statusactive +
Has titleJBrowse demos + and Genomes Unzipped: Public Personal Genomics +
Has topicJBrowse2 +
Is open sourceYes +
Link typedownload +, website +, social media +, source code +, demo server + and wild URL +
Release date2021 +
Tool functionality or classificationGenome visualization +
Written in languageJavascript (ReactJS) +
Has subobjectThis property is a special property in this wiki.JBrowse2#https://jbrowse.org/jb2/docs/quickstart_web +, JBrowse2#http://jbrowse.org +, JBrowse2#http://twitter.com/usejbrowse +, JBrowse2#https://github.com/GMOD/jbrowse-components/ +, JBrowse2#http://jbrowse.org/demos + and JBrowse2#http://genomesunzipped.org/jbrowse +