Edit Tool data: JBrowse2

Jump to: navigation, search

You do not have permission to edit this page, for the following reason:

The action you have requested is limited to users in the group: Users.


The Basics[edit]

Name:
Full name if name is an abbreviation, acronym, etc.

Status:
Current development:
Support status:
Tool classification or features:
Platform: If the tool

Brief description:
Open source:
Software licence:
Type of input data e.g. genomic sequence; taxonomic group; protein identifier; anatomy ontology, etc.

Input formats:
Output formats:
Programming language(s)
Intended usage
First public release
Use standard tool display template? yes


Files[edit]

Logo (file name) enter the name of the file on the GMOD wiki, e.g. CoolAppLogo.png

Screenshot(s)

Contact details[edit]

Contact email
Mailing list(s)


Links[edit]

The majority of links related to the tool should be added using the interface at the bottom of the page.

Download text If there is not a simple download URL for downloading the tool, please enter download instructions here. Download URLs can be entered in the 'Links' section below.

Download source code text If there is not a simple download URL for downloading the source code for the tool, please enter download instructions here. URLs can be entered in the 'Links' section below.


Materials[edit]

Publications
Presentations
Tutorials


Extra Textual Goodies[edit]

Any introductory text for users
Software prerequisites
Installation
Configuration
Documentation
Development team
Development status
Download/usage tracking
Logo info
See also Any extra information, links, etc.

Extra items for component box


Free text:

Links

URL

Title

Link type (e.g. download; tutorial; demo)

Description

URL

Title

Link type (e.g. download; tutorial; demo)

Description

URL

Title

Link type (e.g. download; tutorial; demo)

Description

URL

Title

Link type (e.g. download; tutorial; demo)

Description

URL

Title

Link type (e.g. download; tutorial; demo)

Description

URL

Title

Link type (e.g. download; tutorial; demo)

Description

Interoperable components

Upload a related file

Cancel

Facts about "JBrowse2"RDF feed
Available on platformweb +
Has URLhttps://jbrowse.org/jb2/docs/quickstart_web +, http://jbrowse.org +, http://twitter.com/usejbrowse +, https://github.com/GMOD/jbrowse-components/ + and http://jbrowse.org/demos +
Has descriptionJBrowse 2 is a multi-modal genome browser JBrowse 2 is a multi-modal genome browser that can view data in linear, circular, dotplot, and syntenic modes, in order to better serve the needs of structural variant visualization and comparative genomics. It is coded using React and follows in the footsteps of JBrowse 1 in being highly pluggable. Users can write plugins to create custom data adapters, track types, and even entirely new view types. See https://jbrowse.org/jb2/ for more infoSee https://jbrowse.org/jb2/ for more info +
Has development statusactive +
Has input formatGFF3 +, BigWig +, BAM +, Indexed FASTA +, CRAM +, VCF/GFF/BED tabixed files +, .hic files + and and more +
Has licenceApache 2 +
Has logoJbrowse2_logo.png +
Has software maturity statusmature +
Has support statusactive +
Has titleJBrowse demos +
Has topicJBrowse2 +
Is open sourceYes +
Link typedownload +, website +, social media +, source code + and demo server +
Release dateNovember 2020 +
Tool functionality or classificationGenome visualization +
Written in languageJavascript +, Typescript + and React +
Has subobjectThis property is a special property in this wiki.JBrowse2#https://jbrowse.org/jb2/docs/quickstart_web +, JBrowse2#http://jbrowse.org +, JBrowse2#http://twitter.com/usejbrowse +, JBrowse2#https://github.com/GMOD/jbrowse-components/ +, JBrowse2#http://jbrowse.org/demos + and JBrowse2 +