JBrowse
From GMOD
Status
- Mature release
- Active development
- Active support
Resources
JBrowse is a genome browser with an AJAX-based interface. JBrowse renders most tracks using client side JavaScript and JSON as its data transfer format. JBrowse is the official successor to GBrowse.
Contents
Demo
Requirements
- From CPAN:
- BioPerl 1.6
- JSON
- JSON::XS (optional, for speed)
- libpng
Documentation
- JBrowse Home Page
- JBrowse Tutorial - Tutorial from 2009 GMOD Summer Schools
- JBrowse Quick Tutorial - JBrowse administration.
Presentations
- Talk at the April 21, 2010 UCSC genome browser group ("genecats") meeting.
- JBrowse: A next-generation genome browser - Presentation by Ian Holmes at the August 2009 GMOD Meeting. See the talk's summary for more.
- JBrowse - Presentation by Mitch Skinner at the January 2009 GMOD Meeting. See the talk's summary for more.
- Presentation by Ian Holmes at July 2008 GMOD Meeting. See the talk's summary for more.
Downloads
Screenshots
Demo screenshot from 2009/03/24, showing region of Drosophila melanogaster 2R.
Mailing List
- gmod-ajax@lists.sourceforge.net: Discussion of development, installation problems, etc.
- Subscribe to gmod-ajax
- gmod-ajax archives