Difference between revisions of "InterMine Workshop - GMOD Europe 2010"

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| {{#icon: GMOD2010Europe300.png|GMOD Europe 2010||GMOD Europe 2010}}
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| rowspan="1" | [[File:Sept2010MtgLogo300.png|220px|link=September 2010 GMOD Meeting|September 2010 GMOD Meeting]]
 
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<div style="font-size: 220%; line-height: 140%">{{#icon: InterMineLogo.png|InterMine|300|InterMine}}<br /><br />
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<div style="font-size: 220%; line-height: 140%">[[File:InterMineLogo.png|link=InterMine|300px|InterMine]]<br /><br />
 
[[InterMine]] Workshop<hr /></div>
 
[[InterMine]] Workshop<hr /></div>
<div style="font-size: 160%; line-height: 140%">15 September 2010<br />Cambridge UK<br /><br />Part of [[GMOD Europe 2010]]</div>
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<div style="font-size: 140%; line-height: 140%">15 September 2010<br />Cambridge UK<br />Part of [[GMOD Europe 2010]]</div>
 
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<div style="font-size: 140%; margin: 1em;">~ 10 spaces remaining<br />
 
[[GMOD Europe 2010#Registration|Register Now]]
 
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[[InterMine]] is an open source system for building biological data warehouses with a powerful web interface and query {{GlossaryLink|API|API}}.  See [http://www.flymine.org FlyMine] or [http://www.modmine.org ModMine] for examples.
 
[[InterMine]] is an open source system for building biological data warehouses with a powerful web interface and query {{GlossaryLink|API|API}}.  See [http://www.flymine.org FlyMine] or [http://www.modmine.org ModMine] for examples.
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== The Workshop - 15th September 2010 ==
 
== The Workshop - 15th September 2010 ==
  
The one day (9:30-17:00) workshop will be a hands-on guide to setting up a new [[InterMine]] warehouse, integrating data using existing parsers and writing a custom parser in Perl or Java to add new data.  We will deploy and configure the web application and use it to run some example queries.  We will also run queries using the REST web service API.
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The one day (9:30-17:00) workshop was a hands-on guide to setting up a new [[InterMine]] warehouse, integrating data using existing parsers and writing a custom parser in Perl or Java to add new data.  We deployed and configured the web application and used it to run some example queries.  We will also ran queries using the REST web service {{GlossaryLink|API|API}}.
  
The workshop is intended for software developers, some experience with databases and Perl or Java would be useful.
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The workshop was intended for software developers, and with some experience with databases and Perl or Java.
  
This workshop is a part of [[GMOD Europe 2010]], a four day event including the [[September 2010 GMOD Meeting]] and a {{BioMartWorkshopSept2010Link}}.  GMOD Europe 2010 is being held in Cambridge UK.
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This workshop was a part of [[GMOD Europe 2010]], a four day event including the [[September 2010 GMOD Meeting]] and a {{BioMartWorkshopSept2010Link}}.  GMOD Europe 2010 was held in Cambridge UK.
  
 
== Registration ==
 
== Registration ==
  
 
Registration is free, but required, as space is limited.  Please see the [[GMOD Europe 2010#Registration|GMOD Europe 2010 page]] for a link to the registration form.  You may register for multiple events, or just the InterMine workshop.
 
Registration is free, but required, as space is limited.  Please see the [[GMOD Europe 2010#Registration|GMOD Europe 2010 page]] for a link to the registration form.  You may register for multiple events, or just the InterMine workshop.
 
== Sponsor ==
 
 
{{ImageRight|CambridgeWide.gif|School of Biological Sciences Bioinformatics Training Facility|190|http://www.biomed.cam.ac.uk/gradschool/skills/bioinformatics.html}}
 
This event is sponsored and hosted by the [http://www.biomed.cam.ac.uk/gradschool/skills/bioinformatics.html School of Biological Sciences Bioinformatics Training Facility].  The Bioinformatics Training Facility organises practical training for both undergraduates and postgraduates.  The vast majority of their [http://www.biomed.cam.ac.uk/gradschool/skills/bioinformatics.html postgraduate events] are open and free to all
 
who might benefit.
 
 
The Bioinformatics Training Facility is generously providing all coffee, tea, and break snacks at no charge.  Please thank Dave Judge profusely every time you see him.
 
 
== Lodging and Other Logistics ==
 
 
See the [[GMOD Europe 2010#Logistics|Logistics section]] on the GMOD Europe 2010 page for information.
 
  
 
[[Category:Meetings]]
 
[[Category:Meetings]]
 
[[Category:Education and Outreach]]
 
[[Category:Education and Outreach]]
 
[[Category:InterMine]]
 
[[Category:InterMine]]

Latest revision as of 18:53, 8 October 2012

September 2010 GMOD Meeting
InterMine

InterMine Workshop
15 September 2010
Cambridge UK
Part of GMOD Europe 2010


InterMine is an open source system for building biological data warehouses with a powerful web interface and query API. See FlyMine or ModMine for examples.

It can integrate data from many common biological formats and is easy to extend to include your own data. Parsers are included to load data from Chado, Ensembl, UniProt, KEGG, PubMed, TreeFam, GFF3, FASTA, BioPax and many others.

The web application works out of the box for querying any data is easily customisable. It provides a custom query builder, template queries for creating simple 'canned queries', upload and operations on lists, graphical and statistical widgets for analysing lists of data and MyMine accounts for saving user data.

The Workshop - 15th September 2010

The one day (9:30-17:00) workshop was a hands-on guide to setting up a new InterMine warehouse, integrating data using existing parsers and writing a custom parser in Perl or Java to add new data. We deployed and configured the web application and used it to run some example queries. We will also ran queries using the REST web service API.

The workshop was intended for software developers, and with some experience with databases and Perl or Java.

This workshop was a part of GMOD Europe 2010, a four day event including the September 2010 GMOD Meeting and a BioMart Workshop. GMOD Europe 2010 was held in Cambridge UK.

Registration

Registration is free, but required, as space is limited. Please see the GMOD Europe 2010 page for a link to the registration form. You may register for multiple events, or just the InterMine workshop.