Difference between revisions of "Insertional Mutagenesis Database (IMDB)"
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; '''Description'''<br /> | ; '''Description'''<br /> | ||
| − | : IMDB stores | + | : IMDB stores the sequenced insertion sites for model organisms, provides users with visualization tools to search for insertions in gene of interest and to track progress of multi-project effort to find insertions in each gene of a species, and facilitate the study of insertion site distributions on a geneome. It is suitable for high-throughput insertional mutagenesis projects, such as those mediated by transposons, T-DNAs and other knockout techniques. This project was developed from ATIDB, the Arabidopsis thaliana insertion database. |
; '''Demo & Screenshots'''<br /> | ; '''Demo & Screenshots'''<br /> | ||
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; '''Documentation'''<br /> | ; '''Documentation'''<br /> | ||
: [http://sourceforge.net/project/shownotes.php?release_id=157273 Release notes] | : [http://sourceforge.net/project/shownotes.php?release_id=157273 Release notes] | ||
| + | : [[Media:IMDB.ppt|IMDB: A Generic Insertional Mutagenesis Database]] presentation from the [[May 2003 GMOD Meeting]]. | ||
; '''Contact'''<br /> | ; '''Contact'''<br /> | ||
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; '''Downloads'''<br /> | ; '''Downloads'''<br /> | ||
: [http://sourceforge.net/project/showfiles.php?group_id=27707 From SourceForge] | : [http://sourceforge.net/project/showfiles.php?group_id=27707 From SourceForge] | ||
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Latest revision as of 07:22, 30 January 2008
The item described in this page is not (or is no longer) supported by the GMOD project.
This page is included only for reference purposes.
- Description
- IMDB stores the sequenced insertion sites for model organisms, provides users with visualization tools to search for insertions in gene of interest and to track progress of multi-project effort to find insertions in each gene of a species, and facilitate the study of insertion site distributions on a geneome. It is suitable for high-throughput insertional mutagenesis projects, such as those mediated by transposons, T-DNAs and other knockout techniques. This project was developed from ATIDB, the Arabidopsis thaliana insertion database.
- Demo & Screenshots
- See http://atidb.cshl.org for a database of Arabidopsis insertional mutants.
- Requirements
- MySQL, gbrowse and Perl.
- Documentation
- Release notes
- IMDB: A Generic Insertional Mutagenesis Database presentation from the May 2003 GMOD Meeting.
- Contact
- addresshere.
- Downloads
- From SourceForge
