ISMB/ECCB 2011

ISMB/ECCB 2011 will be held July 15-19 in Vienna Austria. Several other events, such at the Functional Genomics Data Society Meeting and RECOMB-BE will be held before and after ISMB.

GMOD will once again have a strong presence at these events.

Events, Talks, and Posters

Please add your items to this list as they are scheduled.

Day	Time	Track	Title & Presenter/Organizer	Components	Slides / Poster
Fri-Sat 15-16 July	8:30-18:00	Satellites	BOSC: The 12th Annual Bioinformatics Open Source Conference
			Enacting Taverna Workflows through Galaxy, Marco Roos	Galaxy
			InterMine - Using RESTful Webservices for Interoperability, Alex Kalderimis	InterMine
			BioMart 0.8 offers new tools, more interfaces, and increased flexibility through plug-ins, Junjun Zhang	BioMart
			The Galaxy Track Browser: Transforming the Genome Browser from Visualization Tool to Analysis Tool, Jeremy Goecks	Galaxy
			WebApollo: A web-based sequence annotation editor for community annotation, Nomi Harris	WebApollo
			Enabling NGS Analysis with(out) the Infrastructure, Enis Afgan	Galaxy
			SADI for GMOD: Bringing Model Organism Data onto the Semantic Web, Ben Vandervalk
			What's new with GMOD, Scott Cain	GMOD Components
Sunday 17 July	10:45-12:40	ISMB/ECCB Workshops	W1: Bioinformatics Core Facilities. Includes a talk by Brad Chapman on their use of Galaxy at the Harvard School of Public Health	Galaxy
Monday 18 July	12:15-12:40	ISMB/ECCB Tech Track	TT23: Enacting Taverna Workflows through Galaxy, Kostas Karasavvas, NBIC - LUMC	Galaxy	Abstract
	12:40-14:30	ISMB/ECCB Poster Presentations, Odd	V7: SymD server: a platform for detecting internally symmetric protein structures, Chin-Hsien (Emily) Tai, et al., National Cancer Institute	Galaxy
			J43: Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts, Philipp Drewe, et al. Friedrich Miescher Laboratory of the Max Planck Society	Galaxy
Tuesday 19 July	10:45-11:10	ISMB/ECCB Tech Track	TT37: NGS Best Practices through Galaxy: Cloud-based variant discovery with visual analytics, Daniel Blankenberg, Penn State University	Galaxy	Abstract
	12:15-12:40	ISMB/ECCB Proceedings	PT40: From Sets to Graphs: Towards a Realistic Enrichment Analysis of Transcriptomic Systems, Ludwig Geistlinger, LMU München	Galaxy
	12:40-14:30	ISMB/ECCB Poster Presentations, Even	Z04: CADDSuite: A flexible and open framework and workflow system for computer-aided drug design, Marcel Schumann and Marc Röttig, University of Tuebingen	Galaxy
	14:30-16:25	Workshops	W6: Genomics for Non-Model Organisms, Dave Clements This Galaxy organized workshop features these talks: 14:30-14:55: Using RAD-seq for genomic and transcriptomic studies of non-model organisms, Julian Catchen, University of Oregon 15:00-15:25: Using RNA-seq for gene annotation, quantitation, and function in non-model organisms, Jeremy Goecks, Emory University 15:00-15:55: TBD 16:00-16:25: Repeatable plant pathology bioinformatic analysis: not everything is NGS data, Peter Cock, James Hutton Institute	Galaxy
	14:30-14:55	ISMB/ECCB Tech Track	TT48: Oqtans: A Galaxy-integrated workflow for Quantitative Transcriptome Analysis from NGS data, Géraldine Jean and Sebastian J. Schultheiss, Friedrich Miescher Laboratory of Max Planck Society	Galaxy	Abstract
	14:30-14:55	ISMB/ECCB Tech Track	TT24: EMBOSS: New developments and extended data access, Peter Rice, European Bioinformatics Institute	Galaxy	Abstract
	16:00-16:25	ISMB/ECCB Tech Track	TT59: The Galaxy Track Browser: Transforming the Genome Browser from Visualization Tool to Analysis Tool, Jeremy Goecks, Emory University Note: we are trying to reschedule this to an earlier time.	Galaxy	Abstract