Hackathon wikidb
From GMOD
Revision as of 20:33, 23 August 2007 by Dongilbert (Talk | contribs)
Genome wiki from chado notes
- From hackathon
- tasks:
- locate sample chado data (some format) for some genes w/ attributes
- convert to some format suited to wiki loading (as wiki xml?)
- via xml/xslt transforms
- via XORT perl parser
- other
- load to wiki
>> this is larger;loading into wikipedia db via wikipedia.xml
- dump wiki table edit (mysql db)
- convert to chado xml (? xml transforms)
** flybase harvard has scripts for general bulk data to chado.xml
- options:
- use chado sql view/procedure to dump tables suited to wikibox_db ?
- easier