Hackathon wikidb

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Revision as of 20:33, 23 August 2007 by Dongilbert (Talk | contribs)

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Genome wiki from chado notes

- From hackathon

  • tasks:
    • locate sample chado data (some format) for some genes w/ attributes
    • convert to some format suited to wiki loading (as wiki xml?)
      • via xml/xslt transforms
      • via XORT perl parser
      • other
    • load to wiki
    >> this is larger;loading into wikipedia db via wikipedia.xml
         
    • dump wiki table edit (mysql db)
    • convert to chado xml (? xml transforms)
  ** flybase harvard has scripts for general bulk data to chado.xml  
  • options:
    • use chado sql view/procedure to dump tables suited to wikibox_db ?
    • easier