GO Graphic Viewer

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Description
The GO Graphic Viewer module (Bio::GMOD::GO::View) generates a graphic that displays the parent and child relationships of a selected GO term. It also provides the visualization for the result from the GO::TermFinder perl module created by the Stanford Microarray Database (SMD). This module is useful when analyzing experimental or computational results that produce a set of gene products that may have a common function or process. This distribution also includes two examples of its use in web-based user interfaces (goView.pl and goTermFinder.pl). It is a component of the Generic Model Organism Systems Database project (GMOD.sourceforge.net).
Demo & Screenshots
Demo at Stanford
Requirements
The Apache web server (http://www.apache.org/)
Perl 5.005 or higher.
GD and CGI modules.
GraphViz
GO::AnnotationProvider::AnnotationParser
GO::OntologyProvider::OntologyParser
GO::TermFinder
Bioperl Bio::Root::IO
Documentation
N/A
Contact
Shuai Weng
Downloads
From SourceForge
Facts about "GO Graphic Viewer"RDF feed
Available on platformweb +, linux +, os x + and unix +
Has URLhttp://sourceforge.net/projects/gmod/files/GOView/ + and http://www.yeastgenome.org/cgi-bin/GO/goTermFinder.pl +
Has descriptionThe GO Graphic Viewer module (Bio::GMOD::GThe GO Graphic Viewer module (Bio::GMOD::GO::View) generates a graphic that displays the parent and child relationships of a selected GO term. It also provides the visualization for the result from the GO::TermFinder Perl module created by the Stanford Microarray Database (SMD). This module is useful when analyzing experimental or computational results that produce a set of gene products that may have a common function or process. This distribution also includes two examples of its use in web browser-based user interfaces (goView.pl and goTermFinder.pl).nterfaces (goView.pl and goTermFinder.pl). +
Has development statusinactive +
Has input formatgene or ORF names + and OBO ontology +
Has software maturity statusmature +
Has support statusactive +
Has topicGO Graphic Viewer +
Is open sourceYes +
Link typesource code + and public server +
Release date2003 +
Tool functionality or classificationOntology Visualization +
Written in languagePerl +
Has subobjectThis property is a special property in this wiki.GO Graphic Viewer#http://sourceforge.net/projects/gmod/files/GOView/ + and GO Graphic Viewer#http://www.yeastgenome.org/cgi-bin/GO/goTermFinder.pl +