GMOD Users

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GMOD Users

The following databases use GBrowse or Chado or some other popular component of GMOD.


Name Description Location Chado
ANISEED Ascidian Network for In Situ Expression and Embryological Data http://crfb.univ-mrs.fr/ciona-bin/gbrowse/intestinalis/
AntonosporaDB http://gmod.mbl.edu/perl/site/antonospora01
ATIDB Arabidopsis http://atidb.org
Aureococcus http://gmod.mbl.edu/perl/site/aureococcus
AZM-to-BAC Viewer http://maizeapache.ddpsc.org/cgi-bin/gbrowse.cgi?source=01_azm2bac
AZM-to-Gene Viewer http://maizeapache.ddpsc.org/cgi-bin/gbrowse.cgi?source=02_azm2gene
BeeBase http://racerx00.tamu.edu/bee_resources.html
BeetleBase Gbrowse UI http://www.bioinformatics.ksu.edu/BeetleBase/ Yes
BGD Bovine Genome Database http://bovinegenome.org/
BioHealthBase BioDefense Public Health Database http://www.biohealthbase.org/GSearch/
Blochmannia pennsylvanicus http://gmod.mbl.edu/perl/site/blochmannia06
Bovine QTL Viewer http://bovineqtl.tamu.edu
Brachionus plicatilis A http://gmod.mbl.edu/perl/site/bplicatilisa
Brachionus plicatilis B http://gmod.mbl.edu/perl/site/bplicatilisb
Cattle EST Gene Family Database http://racerx00.tamu.edu/cgi-test/searchCattleDatabase.html
CGD Candida Genome Database http://www.candidagenome.org/
CGL Comparative Genomics Library http://www.yandell-lab.org/cgl/
ChromDB Plant Chromatin Database http://www.chromdb.org/
Chromosome 7 Annotation Project http://www.chr7.org/cgi-bin/gbrowse/gbrowse/chr7_v2
CSHLmpd Mammalian Promoter Database http://rulai.cshl.edu/cshlmpd/credit.html
Database of Genomic Variants http://projects.tcag.ca/variation/cgi-bin/gbrowse/hg17
DictyBase http://www.dictybase.org Yes
EcoCyc http://ecocyc.org/
Emiliania huxleyi http://gmod.mbl.edu/emiliania_huxleyi
Enterocytozoon bieneusi http://gmod.mbl.edu/perl/site/ebieneusi
Environmental Sampling Site 396, Fosmid 68 http://gmod.mbl.edu/perl/site/env396_fosmid68
Environmental Sampling Site 396, Fosmid 87 http://gmod.mbl.edu/perl/site/env396_fosmid87
Environmental Sampling Site 396, Fosmids_6_ 56 http://gmod.mbl.edu/perl/site/env396_fosmids_6_56
Environmental Sampling Site Loihi, Red Clone 1 http://gmod.mbl.edu/perl/site/envloihi_clone1
Environmental Sampling Site Loihi, Red Clone 2 http://gmod.mbl.edu/perl/site/envloihi_clone2
FlyBase http://www.flybase.org Yes
Fungal Comparative Genomics Duke Resourcess for Fungal Comparative Genomics and Genome Browsers http://fungal.genome.duke.edu/
Fungal Telomere Browser Fungal Telomere Genomics http://genome.kbrin.uky.edu/fungi_tel/browser.html
Gallus gallus Gallus gallus SAGE http://gmod.mbl.edu/perl/site/g_gallus
Gallus Genome Browser http://genome.ucsc.edu/cgi-bin/hgGateway?org=Chicken
GeneDB Pathogen Sequenceing Unit http://www.genedb.org Yes
giardia14 http://gmod.mbl.edu/perl/site/giardia14
GiardiaDB http://gmod.mbl.edu/perl/site/giardia?page=intro
GrainGenes http://wheat.pw.usda.gov/
Gramene http://www.gramene.org
HapMap http://www.hapmap.org/cgi-perl/gbrowse/
Human 2q33 http://t1dbase.cimr.cam.ac.uk/cgi-bin/gbrowse/2q33/
Human Genome Segmental Duplication Database http://projects.tcag.ca/cgi-bin/duplication/dupbrowse/human_b36
IVDB Influenza Virus Database http://influenza.genomics.org.cn/
Leishmania tarentolae RNA editing database http://gmod.mbl.edu/gb/gbrowse/ltgrna
LIS Legume Information System http://www.comparative-legumes.org/
MAGI Maize Assembled Genomic Island http://magi.plantgenomics.iastate.edu/
Marinobacter aquaeolei http://gmod.mbl.edu/perl/site/marinobacter_jgi
Marinobacter aquaeolei FOSMID 38/33. http://gmod.mbl.edu/perl/site/marinobacter
MGI http://www.informatics.jax.org/
Non-Human Segmental Duplication Database http://projects.tcag.ca/xenodup/gbrowse.php
OMAP Oryza Map Alignment Project http://www.omap.org/
Oncorhynchus tshawytscha Chinook salmon SAGE http://gmod.mbl.edu/perl/site/salmontrout
OryGenesDB http://orygenesdb.cirad.fr/
Oryza Chromosome 8 http://map.lab.nig.ac.jp/cgi-bin/gbrowse/Oryza_chr8/
ParameciumDB http://paramecium.cgm.cnrs-gif.fr/ Yes
PeanutMap http://peanutgenetics.tamu.edu/cmap/
Philodina roseola http://gmod.mbl.edu/perl/site/proseola
PlantsDB MIPS PlantsDB http://mips.gsf.de/cgi-bin/proj/plant/gbrowse/synbrowse
PlasmoDB Plasmodium Genome Resource http://www.plasmodb.org/
PseudoCAP Pseudomonas Genome Database http://v2.pseudomonas.com/whats_new.jsp
PUMAdb Princeton Microarray Database, Chado http://puma.princeton.edu/
RGD Rat Genome Database http://rgd.mcw.edu
Schistosoma mansoni http://gmod.mbl.edu/perl/site/s_mansonigenome
Schistosoma mansoni EST http://gmod.mbl.edu/perl/site/s_mansoniest
SGD http://www.yeastgenome.org
SGD Lite http://sgdlite.princeton.edu/
SmedDB Planaria ESTs http://planaria.neuro.utah.edu/tools/tools.php Yes
SOL Genomics Network http://www.sgn.cornell.edu/ Yes
Soybase http://soybase.agron.iastate.edu/
Soybean Gbrowse Database http://soybeangenome.siu.edu/
SpBase
Synechococcus 4320_2 http://gmod.mbl.edu/perl/site/syn_4320_2
Synechococcus CC9605 http://gmod.mbl.edu/perl/site/syn_cc9605
Synechococcus CC9902 http://gmod.mbl.edu/perl/site/syn_cc9902
Synechococcus RS9916 http://gmod.mbl.edu/perl/site/syn_rs9916
Synechococcus RS9917 http://gmod.mbl.edu/perl/site/syn_rs9917
Synechococcus WH5701 http://gmod.mbl.edu/perl/site/syn_wh5701
Synechococcus WH7805 http://gmod.mbl.edu/perl/site/syn_wh7805
T1DBase Type 1 Diabetes Database http://t1dbase.org/cgi-bin/dispatcher.cgi/Welcome/display
TAIR http://www.arabidopsis.org
TGD Tetrahymena Genome Database http://www.ciliate.org/help/Locus.shtml
TGI The Gene Index Project http://biocomp.dfci.harvard.edu/tgi/
TIGR The Institute for Genomic Research http://www.tigr.org Yes
TIGR Medicago BACs http://www.tigr.org/tigr-scripts/medicago/gbrowse_bacs.pl
TIGR Rice Genome Browser http://rice.tigr.org/tigr-scripts/osa1/gbrowse/ricegenomebrowser
ToxoDB Toxoplasma gondii database http://v3-0.toxodb.org/
TriAnnot BAC Viewer http://urgi.infobiogen.fr/projects/TriAnnot/GBrowse.php
Trypanosoma brucei brucei http://gmod.mbl.edu/perl/site/t_bruceibrucei02
Trypanosoma brucei brucei GenBank Entries http://gmod.mbl.edu/perl/site/t_bruceigenbank
Trypanosoma brucei brucei RNA editing database http://gmod.mbl.edu/gb/gbrowse/grna
Trypanosoma brucei gambiense http://gmod.mbl.edu/perl/site/t_bruceigambiense
Trypanosoma brucei rhodesiense http://gmod.mbl.edu/perl/site/t_bruceirhodesiense
Trypanosoma cruzi http://gmod.mbl.edu/perl/site/t_cruzi
UNH HCGS Tetraodon Genome Browser Gbrowse plus GFF http://hcgs.unh.edu/gbrowse/
VectorBase Chado, DAS, Apollo http://www.vectorbase.org Yes
wFleaBase Daphnia http://wfleabase.org/ Yes
WormBase http://www.wormbase.org
XanthusBase http://www.xanthusbase.org/ Yes
Xenbase http://www.xenbase.org/
Trichomona vaginalis http://www.uclaaccess.ucla.edu/UCLAACCESS/Web/Faculty.aspx?ri=58 Yes
Microarray data, Chado, H. sapiens http://genetics.ucla.edu/labs/nelson/ Yes
http://www.wicell.org Yes

Bosborne 22:18, 23 February 2007 (EST)