Difference between revisions of "GMOD Project Page"
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* '''community annotation''' improvements. This includes Wiki annotation using [[Table_Editor]] and [[Hackathon wikidb]], with possible additions, as well as well-used [[Apollo]] tool. | * '''community annotation''' improvements. This includes Wiki annotation using [[Table_Editor]] and [[Hackathon wikidb]], with possible additions, as well as well-used [[Apollo]] tool. | ||
| − | * '''curation automation''' and facilitation (literature, other). This includes [[PubSearch]], [[PubFetch]], [[Textpresso]] and possible improvements, additions. | + | * '''curation automation''' and facilitation (literature, other). This includes [[PubSearch]], [[PubFetch]] (now unsupported - 2008/10), [[Textpresso]] and possible improvements, additions. |
[[User:Dongilbert|Dongilbert]] 18:14, 7 December 2007 (EST) | [[User:Dongilbert|Dongilbert]] 18:14, 7 December 2007 (EST) | ||
Revision as of 16:30, 15 October 2008
Contents
Description
This page describes a variety of special GMOD project proposals that need developer support. Please contact the proposer or a mailing list if you think you might want to contribute to a project.
Projects
GMOD needs for 2008 : dgg
These are some thoughts on areas of GMOD that have additions in formative stages, or are on a list for consideration. Please add your comments and suggestions.
- automated genome analysis pipeline including TeraGrid use. See Genome grid and Ergatis projects.
- MAKER, an annotation pipeline package for eukaryotic genomes, has been added to GMOD. 2008/05/13
- database processing of high throughput genomics analyses with input, output, integration, summarization tools, including genome data types such as SNP, tile arrays, expression arrays, interaction data ... (add to this list).
- comparative genomics improvements. Projects in this area include the widely used CMap, and current syntenic map projects (see GMOD_Components). But it should expand to include better cross-species data management of analyses, phylogenetic genome statistics.
- community annotation improvements. This includes Wiki annotation using Table_Editor and Hackathon wikidb, with possible additions, as well as well-used Apollo tool.
- curation automation and facilitation (literature, other). This includes PubSearch, PubFetch (now unsupported - 2008/10), Textpresso and possible improvements, additions.
Dongilbert 18:14, 7 December 2007 (EST)
SynBrowse
The SynBrowse synteny browser needs help to get SynBrowse2 out. See the announcement on the GMOD News page.
Chado Documentation Reorganization
We are reorganizing the Chado related documentation in this web site. See the Chado Documentation Reorganization page for more on this effort and how you can help direct it.
