Difference between revisions of "GBrowse Tutorial"
m |
m |
||
| Line 1: | Line 1: | ||
{{UnderConstruction}} | {{UnderConstruction}} | ||
| − | |||
| − | |||
{| class="tutorialheader" | {| class="tutorialheader" | ||
| align="right" | {{#icon: GMOD2009Europe170.png|2009 GMOD Summer School - Europe||2009 GMOD Summer School - Europe}} | | align="right" | {{#icon: GMOD2009Europe170.png|2009 GMOD Summer School - Europe||2009 GMOD Summer School - Europe}} | ||
| Line 21: | Line 19: | ||
: This tutorial was originally taught by [[User:Scott|Scott Cain]] at the [[2009 GMOD Summer School - Europe]]. It walks you through setting up and running the [[MAKER]] genome annotation pipeline with some sample data. It provides a [[VMware]] image to work on, and relies heavily on the [http://gmod.cvs.sourceforge.net/*checkout*/gmod/Generic-Genome-Browser/docs/tutorial/tutorial.html?pathrev=stable GBrowse Administration Tutorial]. | : This tutorial was originally taught by [[User:Scott|Scott Cain]] at the [[2009 GMOD Summer School - Europe]]. It walks you through setting up and running the [[MAKER]] genome annotation pipeline with some sample data. It provides a [[VMware]] image to work on, and relies heavily on the [http://gmod.cvs.sourceforge.net/*checkout*/gmod/Generic-Genome-Browser/docs/tutorial/tutorial.html?pathrev=stable GBrowse Administration Tutorial]. | ||
| − | + | ||
| − | This tutorial was also taught at the [[2009 GMOD Summer School - Americas]], but the notes and | + | '''Note:''' This tutorial was also taught at the [[2009 GMOD Summer School - Americas]], but the notes and system image used here are from the [[2009 GMOD Summer School - Europe|Europe course]]. |
</div> | </div> | ||
Revision as of 22:45, 24 September 2009
This page or section is under construction.
{{{1}}}
| {{#icon: GMOD2009Europe170.png|2009 GMOD Summer School - Europe | 2009 GMOD Summer School - Europe}} | GBrowse Session 2009 GMOD Summer School - Europe |
There are several GBrowse tutorials:
- GBrowse User Tutorial at OpenHelix
- Demonstrates the GBrowse user interface.
- GBrowse Administration Tutorial
- Step by step guide on how to configure and load data into GBrowse.
- This tutorial
- This tutorial was originally taught by Scott Cain at the 2009 GMOD Summer School - Europe. It walks you through setting up and running the MAKER genome annotation pipeline with some sample data. It provides a VMware image to work on, and relies heavily on the GBrowse Administration Tutorial.
Note: This tutorial was also taught at the 2009 GMOD Summer School - Americas, but the notes and system image used here are from the Europe course.
VMware
| This tutorial was taught using a VMware system image as a starting point. If you want to start with that same system, download and install the Starting image. There is also an Ending image for this tutorial, which contains the system after this tutorial (and the GBrowse_syn Tutorial) have been finished.
See VMware for what software you need to use a VMware system image, and for directions on how to get the image setup and running on your machine. |
|
Caveats
Important Note
This tutorial describes the world as it existed on the day the tutorial was given. Please be aware that things like CPAN modules, Java libraries, and Linux packages change over time, and that the instructions in the tutorial will slowly drift over time. Newer versions of tutorials will be posted as they become available.
