Difference between revisions of "DIYA"
From GMOD
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| − | {{Tool data | + | {{Tool data |
|name=DIYA | |name=DIYA | ||
| + | |full name=Do-It-Yourself Annotator | ||
|status=beta release | |status=beta release | ||
|dev=inactive | |dev=inactive | ||
|support=inactive | |support=inactive | ||
| − | |type=Genome | + | |type=Genome annotation, Workflow management, Tool integration |
| − | |platform=linux, unix, os x | + | |platform=linux, unix, os x |
|about=DIYA (Do-It-Yourself Annotator) is a modular and configurable open source pipeline framework, written in Perl, used for the rapid annotation of microbial genome sequences. The software is currently used to take nucleotide sequence contigs as input, either in the form of complete genomes or the result of shotgun sequencing, and produce an annotated sequence. | |about=DIYA (Do-It-Yourself Annotator) is a modular and configurable open source pipeline framework, written in Perl, used for the rapid annotation of microbial genome sequences. The software is currently used to take nucleotide sequence contigs as input, either in the form of complete genomes or the result of shotgun sequencing, and produce an annotated sequence. | ||
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Active development of DIYA is currently on hiatus, pending the hiring of additional people to work on it. [[User:Stewarta|Andrew Stewart]], one of DIYA's developers also has plans to convert the DIYA modules into a series of [[Galaxy]] modules. | Active development of DIYA is currently on hiatus, pending the hiring of additional people to work on it. [[User:Stewarta|Andrew Stewart]], one of DIYA's developers also has plans to convert the DIYA modules into a series of [[Galaxy]] modules. | ||
|open source=Yes | |open source=Yes | ||
| − | |licence=GPL | + | |licence=[http://opensource.org/licenses/gpl-license Gnu GPL] |
| − | |input=FASTA | + | |input=FASTA, GFF, Genbank |
| − | |output=FASTA | + | |output=FASTA, GFF, Genbank |
|language=Perl | |language=Perl | ||
| − | |audience= | + | |audience=private |
| − | + | ||
|logo=DIYALogo.png | |logo=DIYALogo.png | ||
|contact=[mailto:andrew.c.stewart@gmail.com Andrew Stewart],[mailto:briano@bioteam.net Brian Osborne] | |contact=[mailto:andrew.c.stewart@gmail.com Andrew Stewart],[mailto:briano@bioteam.net Brian Osborne] | ||
|mail={{MailingListsFor|DIYA}} | |mail={{MailingListsFor|DIYA}} | ||
| − | |papers= | + | |papers=DIYA: a bacterial annotation pipeline for any genomics lab. <ref name="PMID:19254921" /> |
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}} | }} | ||
| + | [[Category:GMOD Components]] | ||
| + | [[Category:Annotation]] | ||
| + | [[Category:GMOD Component]] | ||
{{SemanticLink | {{SemanticLink | ||
|linkurl=https://github.com/bioteam/DIYA | |linkurl=https://github.com/bioteam/DIYA | ||
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|linktype=website | |linktype=website | ||
}} | }} | ||
| − | + | {{InteroperableComponent | |
| − | + | |relationship=provides input for | |
| − | + | |object=GBrowse | |
| − | + | }} | |
Revision as of 23:34, 16 October 2013
Facts about "DIYA"RDF feed
| Available on platform | linux +, unix + and os x + |
| Has URL | https://github.com/bioteam/DIYA + |
| Has description | DIYA (Do-It-Yourself Annotator) is a modul … DIYA (Do-It-Yourself Annotator) is a modular and configurable open source pipeline framework, written in Perl, used for the rapid annotation of microbial genome sequences. The software is currently used to take nucleotide sequence contigs as input, either in the form of complete genomes or the result of shotgun sequencing, and produce an annotated sequence.
Status[edit]Active development of DIYA is currently on hiatus, pending the hiring of additional people to work on it. Andrew Stewart, one of DIYA's developers also has plans to convert the DIYA modules into a series of Galaxy modules.dules into a series of Galaxy modules. + |
| Has development status | inactive + |
| Has full name | Do-It-Yourself Annotator + |
| Has input format | FASTA +, GFF + and Genbank + |
| Has licence | Gnu GPL + |
| Has logo | DIYALogo.png + |
| Has output format | FASTA +, GFF + and Genbank + |
| Has software maturity status | beta release + |
| Has support status | inactive + |
| Has topic | DIYA + |
| Interaction type | provides input for + |
| Interactor | DIYA + |
| Interacts with | GBrowse + |
| Is open source | Yes + |
| Link type | download + and website + |
| Tool functionality or classification | Genome annotation +, Workflow management + and Tool integration + |
| Written in language | Perl + |
| Has subobjectThis property is a special property in this wiki. | DIYA#https://github.com/bioteam/DIYA + and DIYA + |
