Difference between revisions of "DIYA"

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m (Semantifying DIYA.)
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{{Tool data
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{{Tool data display
 
|name=DIYA
 
|name=DIYA
 
|status=beta release
 
|status=beta release
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|mail={{MailingListsFor|DIYA}}
 
|mail={{MailingListsFor|DIYA}}
 
|papers=http://bioinformatics.oxfordjournals.org/content/25/7/962.abstract
 
|papers=http://bioinformatics.oxfordjournals.org/content/25/7/962.abstract
|dl tracking=not active
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|dl tracking=N/A
|gmod date=2009
+
 
|survey link=
 
|survey link=
 
|contact email=[mailto:andrew.c.stewart@gmail.com Andrew Stewart],[mailto:briano@bioteam.net Brian Osborne]
 
|contact email=[mailto:andrew.c.stewart@gmail.com Andrew Stewart],[mailto:briano@bioteam.net Brian Osborne]
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|dev status=
 
|dev status=
 
}}
 
}}
[[File:DIYALogo.png|center|150px|DIYA]]
 
 
 
{{ComponentBox
 
|{{DIYAResourcesBoxItem}}
 
| | | | |}}
 
 
 
DIYA (Do-It-Yourself Annotator) is a modular and configurable open source pipeline framework, written in Perl, used for the rapid annotation of microbial genome sequences. The software is currently used to take nucleotide sequence contigs as input, either in the form of complete genomes or the result of shotgun sequencing, and produce an annotated sequence.
 
 
== Status ==
 
 
Active development of DIYA is currently on hiatus, pending the hiring of additional people to work on it.  [[User:Stewarta|Andrew Stewart]], one of DIYA's developers also has plans to convert the DIYA modules into a series of [[Galaxy]] modules.
 
 
==Developers==
 
* Navy Medical Research Center (NMRC)
 
* BHSAI
 
* University of Maryland - Center for Bioinformatics & Computational Biology
 
* Bioteam Inc
 
 
==Download==
 
 
* [https://github.com/bioteam/DIYA DIYA]
 
 
 
==Installation & Documentation==
 
 
* [https://github.com/bioteam/DIYA DIYA]
 
 
==Support==
 
 
===Mailing Lists===
 
 
{{MailingListsFor|DIYA}}
 
 
===Bugs===
 
* [https://github.com/bioteam/DIYA/issues Issues]
 
 
 
==References==
 
* [http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btp097 publication]
 
 
 
 
 
 
 
[[Category:GMOD Components]]
 
[[Category:Annotation]]
 
 
{{SemanticLink
 
{{SemanticLink
 
|linkurl=https://github.com/bioteam/DIYA
 
|linkurl=https://github.com/bioteam/DIYA
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|linktype=website
 
|linktype=website
 
}}
 
}}
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[[Category:GMOD Components]]
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[[Category:Annotation]]

Revision as of 23:23, 16 October 2013


DIYA logo
Status
  • Beta release
  • Development: inactive
  • Support: inactive
Resources
Interoperable Components


About DIYA

DIYA (Do-It-Yourself Annotator) is a modular and configurable open source pipeline framework, written in Perl, used for the rapid annotation of microbial genome sequences. The software is currently used to take nucleotide sequence contigs as input, either in the form of complete genomes or the result of shotgun sequencing, and produce an annotated sequence.

Status

Active development of DIYA is currently on hiatus, pending the hiring of additional people to work on it. Andrew Stewart, one of DIYA's developers also has plans to convert the DIYA modules into a series of Galaxy modules.


Visit the DIYA website.


Downloads


Using DIYA

Publications, Tutorials, and Presentations

Publications on or mentioning DIYA

http://bioinformatics.oxfordjournals.org/content/25/7/962.abstract


Contacts and Mailing Lists

Mailing List Link Description Archive(s)
DIYA diyg-pub-l DIYA general discussion and support. Nabble (2010/05+)
diyg-dev-l DIYA developer discussion.




More on DIYA

Facts about "DIYA"RDF feed
Available on platformlinux +, unix +, os x + and web +
Has URLhttps://github.com/bioteam/DIYA +
Has descriptionDIYA (Do-It-Yourself Annotator) is a modulDIYA (Do-It-Yourself Annotator) is a modular and configurable open source pipeline framework, written in Perl, used for the rapid annotation of microbial genome sequences. The software is currently used to take nucleotide sequence contigs as input, either in the form of complete genomes or the result of shotgun sequencing, and produce an annotated sequence.

Status[edit]

Active development of DIYA is currently on hiatus, pending the hiring of additional people to work on it. Andrew Stewart, one of DIYA's developers also has plans to convert the DIYA modules into a series of Galaxy modules.
dules into a series of Galaxy modules. +
Has development statusinactive +
Has input formatFASTA +, Genbank + and GFF +
Has licenceGPL +
Has logoDIYALogo.png +
Has nameDIYA +
Has output formatFASTA +, Genbank + and GFF +
Has software maturity statusbeta release +
Has support statusinactive +
Has topicDIYA +
Intended usagePrivate: handle data in a local system. E.g. an annotation tool where data goes into a local DB +
Is open sourceYes +
Link typedownload + and website +
Release date1 January 2008 +
Tool functionality or classificationGenome Annotation +, Workflow Management + and Tool Integration +
Written in languagePerl +
Has subobjectThis property is a special property in this wiki.DIYA#https://github.com/bioteam/DIYA +