Difference between revisions of "DIYA"
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|contact email=[mailto:andrew.c.stewart@gmail.com Andrew Stewart],[mailto:briano@bioteam.net Brian Osborne] | |contact email=[mailto:andrew.c.stewart@gmail.com Andrew Stewart],[mailto:briano@bioteam.net Brian Osborne] | ||
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{{SemanticLink | {{SemanticLink | ||
|linkurl=https://github.com/bioteam/DIYA | |linkurl=https://github.com/bioteam/DIYA | ||
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+ | [[Category:Annotation]] |
Revision as of 23:23, 16 October 2013
Status
- Beta release
- Development: inactive
- Support: inactive
Resources
Interoperable Components
Contents
About DIYA
DIYA (Do-It-Yourself Annotator) is a modular and configurable open source pipeline framework, written in Perl, used for the rapid annotation of microbial genome sequences. The software is currently used to take nucleotide sequence contigs as input, either in the form of complete genomes or the result of shotgun sequencing, and produce an annotated sequence.
Status
Active development of DIYA is currently on hiatus, pending the hiring of additional people to work on it. Andrew Stewart, one of DIYA's developers also has plans to convert the DIYA modules into a series of Galaxy modules.
Visit the DIYA website.
Downloads
Using DIYA
Publications, Tutorials, and Presentations
Publications on or mentioning DIYA
http://bioinformatics.oxfordjournals.org/content/25/7/962.abstract
Contacts and Mailing Lists
Mailing List Link | Description | Archive(s) | |
---|---|---|---|
DIYA | diyg-pub-l | DIYA general discussion and support. | Nabble (2010/05+) |
diyg-dev-l | DIYA developer discussion. |
More on DIYA
Facts about "DIYA"RDF feed
Available on platform | linux +, unix +, os x + and web + |
Has URL | https://github.com/bioteam/DIYA + |
Has description | DIYA (Do-It-Yourself Annotator) is a modul … DIYA (Do-It-Yourself Annotator) is a modular and configurable open source pipeline framework, written in Perl, used for the rapid annotation of microbial genome sequences. The software is currently used to take nucleotide sequence contigs as input, either in the form of complete genomes or the result of shotgun sequencing, and produce an annotated sequence.
Status[edit]Active development of DIYA is currently on hiatus, pending the hiring of additional people to work on it. Andrew Stewart, one of DIYA's developers also has plans to convert the DIYA modules into a series of Galaxy modules.dules into a series of Galaxy modules. + |
Has development status | inactive + |
Has input format | FASTA +, Genbank + and GFF + |
Has licence | GPL + |
Has logo | DIYALogo.png + |
Has name | DIYA + |
Has output format | FASTA +, Genbank + and GFF + |
Has software maturity status | beta release + |
Has support status | inactive + |
Has topic | DIYA + |
Intended usage | Private: handle data in a local system. E.g. an annotation tool where data goes into a local DB + |
Is open source | Yes + |
Link type | download + and website + |
Release date | 1 January 2008 + |
Tool functionality or classification | Genome Annotation +, Workflow Management + and Tool Integration + |
Written in language | Perl + |
Has subobjectThis property is a special property in this wiki. | DIYA#https://github.com/bioteam/DIYA + |