Chado Phenotype Module
From GMOD
Introduction
Tables
phenotype
a phenotypic statement, or a single atomic phenotypic observation a controlled sentence describing observable effect of non-wt function – e.g. Obs=eye, attribute=color, cvalue=red
Table 4.42: phenotype
Column Datatype Description phenotype id integer uniquename text observable id integer The entity: e.g. anatomy part, biological process attr id integer Phenotypic attribute (quality, property, attribute,
character) - drawn from PATO
valuetext value of attribute - unconstrained free text. Used
only if cvalue id is not appropriate
cvalue id integer Phenotype attribute value (state) assay idinteger evidence type
phenotype_cvterm
NULL
Table 4.43: phenotype cvterm
Column Datatype Description phenotype cvterm id integer phenotype id integer cvterm id integer
feature_phenotype
NULL
Table 4.44: feature phenotype
ColumnDatatype Description feature phenotype id integer feature id integer phenotype idinteger
