Difference between revisions of "Canto"

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|support=active
 
|support=active
 
|type=literature curation,
 
|type=literature curation,
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|platform=linux, unix, web
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|platform=linux, unix, os x, web
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|about=Canto is an online annotation tool which has been developed to allow researchers to curate the genetic and molecular data from their publications for inclusion in public biological databases. Originally created for the fission yeast community, Canto is a generic tool that can be readily configured for use with other organisms and other databases.
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|about=Canto is an online tool aimed at allowing community annotation of genomes. It has been developed to allow researchers to curate the genetic and molecular data from their publications for inclusion in public biological databases. Originally created for the fission yeast community, Canto is a generic tool that can be readily configured for use with other organisms and other databases.
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|open source=Yes
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|open source=yes
 
|licence=GPL3
 
|licence=GPL3
 +
|input data type=ontology terms
 +
 +
|output=JSON, GAF
 
|language=Perl
 
|language=Perl
 
|audience=Private: handle data in a local system. E.g. an annotation tool where data goes into a local DB
 
|audience=Private: handle data in a local system. E.g. an annotation tool where data goes into a local DB
 
|release date=2013/11/01
 
|release date=2013/11/01
 
|use template=Yes
 
|use template=Yes
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|logo=CantoTextLogo.png
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|logo=CantoLogo.png
 
|contact=kmr44@cam.ac.uk
 
|contact=kmr44@cam.ac.uk
 
|mail=Please email the [mailto:helpdesk@pombase.org PomBase helpdesk] with any questions or problems.
 
|mail=Please email the [mailto:helpdesk@pombase.org PomBase helpdesk] with any questions or problems.
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|install=Full instructions for installing Canto are available on the [https://github.com/pombase/canto Canto github page].
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|install=Full instructions for installing Canto are available from the [https://github.com/pombase/canto/blob/master/documentation/canto_admin.md Canto github respository].
 
|doc=Instructions for using Canto are integrated into the tool installations and at the [http://curation.pombase.org/pombe/docs/index/ PomBase Canto site].
 
|doc=Instructions for using Canto are integrated into the tool installations and at the [http://curation.pombase.org/pombe/docs/index/ PomBase Canto site].
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|dev ppl=Canto is developed as part of the [http://pombase.org PomBase project], which provides a model organism database for the fission yeast ''Schizosaccharomyces pombe''. PomBase is funded by the [http://www.wellcome.ac.uk/ Wellcome Trust] and is run by a consortium comprising the [http://www.cam.ac.uk/ University of Cambridge], the [http://www.ebi.ac.uk European
 
−
Bioinformatics Institute] and [http://www.ucl.ac.uk/ University College London].
 
 
}}
 
}}
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{{SemanticLink
 
{{SemanticLink
 
|linkurl=http://curation.pombase.org/
 
|linkurl=http://curation.pombase.org/
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}}
 
}}
 
{{SemanticLink
 
{{SemanticLink
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|linkurl=http://curation.pombase.org/pombe/docs/index/
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|linkurl=https://github.com/pombase/canto/blob/master/documentation/canto_admin.md
 
|linktype=documentation
 
|linktype=documentation
 
}}
 
}}
 
{{SemanticLink
 
{{SemanticLink
 
|linkurl=http://curation.pombase.org/uniprot
 
|linkurl=http://curation.pombase.org/uniprot
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|linktype=wild URL
 
 
|linktitle=Generic Gene Ontology Canto
 
|linktitle=Generic Gene Ontology Canto
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|linktype=wild URL
 
|linkdesc=Curate GO annotations for proteins using UniProtKB identifiers
 
|linkdesc=Curate GO annotations for proteins using UniProtKB identifiers
 
}}
 
}}
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{{InteroperableComponent
 
{{InteroperableComponent
 
|relationship=can save data in
 
|relationship=can save data in
 
|object=Chado
 
|object=Chado
 
}}
 
}}

Revision as of 07:54, 28 November 2013

Canto logo
Status
  • Mature release
  • Development: active
  • Support: active
Licence
{{{PAGENAME}}} is open source

GPL 3.0

Resources
Interoperable Components


About Canto

Canto is an online tool aimed at allowing community annotation of genomes. It has been developed to allow researchers to curate the genetic and molecular data from their publications for inclusion in public biological databases. Originally created for the fission yeast community, Canto is a generic tool that can be readily configured for use with other organisms and other databases.


Visit the Canto website.


Downloads


Using Canto

Installation

Full instructions for installing Canto are available from the Canto github respository.

Documentation

Instructions for using Canto are integrated into the tool installations and at the PomBase Canto site.



Contacts and Mailing Lists

Please email the PomBase helpdesk with any questions or problems.

Canto in the wild

Public installations of Canto:



More on Canto




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"yes" is not in the list of possible values (Yes, No, Caveats apply) for this property. "yes" is not in the list of possible values (Yes, No, Caveats apply) for this property. "yes" is not in the list of possible values (Yes, No, Caveats apply) for this property. "yes" is not in the list of possible values (Yes, No, Caveats apply) for this property. "yes" is not in the list of possible values (Yes, No, Caveats apply) for this property. "yes" is not in the list of possible values (Yes, No, Caveats apply) for this property.

Retrieved from "http://gmod.org/mediawiki/index.php?title=Canto&oldid=24878"
Facts about "Canto"RDF feed
Available on platformlinux +, unix +, os x + and web +
Has URLhttp://curation.pombase.org/ +, http://curation.pombase.org/demo +, https://github.com/pombase/canto +, https://github.com/pombase/canto/blob/master/documentation/canto_admin.md + and http://curation.pombase.org/uniprot +
Has descriptionCanto is an online tool aimed at allowing … Canto is an online tool aimed at allowing community annotation of genomes. It has been developed to allow researchers to curate the genetic and molecular data from their publications for inclusion in public biological databases. Originally created for the fission yeast community, Canto is a generic tool that can be readily configured for use with other organisms and other databases. with other organisms and other databases. + and Curate GO annotations for proteins using UniProtKB identifiers +
Has development statusactive +
Has licenceGPL3 +
Has logoCantoLogo.png +
Has output formatJSON + and GAF +
Has software maturity statusmature +
Has support statusactive +
Has titleGeneric Gene Ontology Canto +
Has topicCanto +
Interaction typecan save data in +
InteractorCanto +
Interacts withChado +
Link typewebsite +, demo server +, download +, documentation + and wild URL +
Release date1 November 2013 +
Tool functionality or classificationliterature curation +
Written in languagePerl +
Has subobjectThis property is a special property in this wiki.Canto#http://curation.pombase.org/ +, Canto#http://curation.pombase.org/demo +, Canto#https://github.com/pombase/canto +, Canto#https://github.com/pombase/canto/blob/master/documentation/canto_admin.md +, Canto#http://curation.pombase.org/uniprot + and Canto +