Difference between revisions of "Canto"

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m (Adding canto cloud link)
 
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|dev=active
 
|dev=active
 
|support=active
 
|support=active
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|type=literature curation,
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|type=literature curation, functional annotation, community annotation
 
|platform=linux, unix, os x, web
 
|platform=linux, unix, os x, web
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|about=Canto is an online tool aimed at allowing community annotation of genomes. It has been developed to allow researchers to curate the genetic and molecular data from their publications for inclusion in public biological databases. Originally created for the fission yeast community, Canto is a generic tool that can be readily configured for use with other organisms and other databases.
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|about=Canto is an online tool that supports functional gene annotation by community researchers as well as by professional curators. It provides a simple interface to gather genetic and molecular data from publications for inclusion in public biological databases. Canto employs OBO ontologies to ensure a consistent vocabulary is used to describe gene and gene product functionality and location.
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|open source=yes
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Genetic and physical interaction annotation is also supported. Canto captures all necessary information about each interaction for submission to BioGRID.
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Canto currently supports annotation export in JSON format, either by individual paper or in bulk. The JSON data from Canto can be loaded into a relational database using the Chado schema (as at PomBase) or alternative schemas.
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|open source=Yes
 
|licence=GPL3
 
|licence=GPL3
 
|input data type=genome annotation
 
|input data type=genome annotation
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|input=OBO, gene/protein IDs, literature
 
|output=JSON, GAF
 
|output=JSON, GAF
 
|language=Perl
 
|language=Perl
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|release date=2013/11/01
 
|release date=2013/11/01
 
|use template=Yes
 
|use template=Yes
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|logo=CantoTextLogo.png
 
|contact=kmr44@cam.ac.uk
 
|contact=kmr44@cam.ac.uk
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|logo=CantoTextLogo.png
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|mail={{MailingListsFor|Canto}}
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|mail=Please email the [mailto:helpdesk@pombase.org PomBase helpdesk] with any questions or problems.
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|presentations=*[[:File:Canto-cloud.pdf|Quickstart Community Curation with Canto in the Cloud]] poster from Biocuration 2014
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|install=Full instructions for installing Canto are available from the [https://github.com/pombase/canto/blob/master/documentation/canto_admin.md Canto github respository].
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|install=Full instructions for installing Canto are available from the [https://github.com/pombase/canto/blob/master/documentation/canto_admin.md Canto github repository].
 
|doc=Instructions for using Canto are integrated into the tool installations and at the [http://curation.pombase.org/pombe/docs/index/ PomBase Canto site].
 
|doc=Instructions for using Canto are integrated into the tool installations and at the [http://curation.pombase.org/pombe/docs/index/ PomBase Canto site].
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|dev ppl=Canto is developed as part of the [http://pombase.org PomBase project], which provides a model organism database for the fission yeast ''Schizosaccharomyces pombe''. PomBase is funded by the [http://www.wellcome.ac.uk/ Wellcome Trust] and is run by a consortium comprising the [http://www.cam.ac.uk/ University of Cambridge], the [http://www.ebi.ac.uk European
 
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Bioinformatics Institute] and [http://www.ucl.ac.uk/ University College London].
 
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}}
 
}}
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[[Category:GMOD Component]]
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[[Category:Annotation]]
 
{{SemanticLink
 
{{SemanticLink
 
|linkurl=http://curation.pombase.org/
 
|linkurl=http://curation.pombase.org/
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|linkurl=https://github.com/pombase/canto/blob/master/documentation/canto_admin.md
 
|linkurl=https://github.com/pombase/canto/blob/master/documentation/canto_admin.md
 
|linktype=documentation
 
|linktype=documentation
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}}
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{{SemanticLink
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|linkurl=http://curation.pombase.org/pombe
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|linktitle=PomBase Canto
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|linktype=wild URL
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|linkdesc=Curate GO annotations for S. pombe
 
}}
 
}}
 
{{SemanticLink
 
{{SemanticLink

Latest revision as of 23:11, 18 April 2014

Canto logo
Status
  • Mature release
  • Development: active
  • Support: active
Licence
{{{PAGENAME}}} is open source

GPL 3.0

Resources
Interoperable Components


About Canto

Canto is an online tool that supports functional gene annotation by community researchers as well as by professional curators. It provides a simple interface to gather genetic and molecular data from publications for inclusion in public biological databases. Canto employs OBO ontologies to ensure a consistent vocabulary is used to describe gene and gene product functionality and location.

Genetic and physical interaction annotation is also supported. Canto captures all necessary information about each interaction for submission to BioGRID.

Canto currently supports annotation export in JSON format, either by individual paper or in bulk. The JSON data from Canto can be loaded into a relational database using the Chado schema (as at PomBase) or alternative schemas.


Visit the Canto website.


Downloads


Using Canto

Installation

Full instructions for installing Canto are available from the Canto github repository.

Documentation

Instructions for using Canto are integrated into the tool installations and at the PomBase Canto site.

Publications, Tutorials, and Presentations

Presentations

Contacts and Mailing Lists

Mailing List Link Description Archive(s)
Canto gmod-canto Canto help and general questions. Sourceforge

Canto in the wild

Public installations of Canto:



More on Canto

Retrieved from "http://gmod.org/mediawiki/index.php?title=Canto&oldid=25688"
Facts about "Canto"RDF feed
Available on platformlinux +, unix +, os x + and web +
Has URLhttp://curation.pombase.org/ +, http://curation.pombase.org/demo +, https://github.com/pombase/canto +, https://github.com/pombase/canto/blob/master/documentation/canto_admin.md +, http://curation.pombase.org/pombe + and http://curation.pombase.org/uniprot +
Has descriptionCanto is an online tool that supports func … Canto is an online tool that supports functional gene annotation by community researchers as well as by professional curators. It provides a simple interface to gather genetic and molecular data from publications for inclusion in public biological databases. Canto employs OBO ontologies to ensure a consistent vocabulary is used to describe gene and gene product functionality and location.

Genetic and physical interaction annotation is also supported. Canto captures all necessary information about each interaction for submission to BioGRID.

Canto currently supports annotation export in JSON format, either by individual paper or in bulk. The JSON data from Canto can be loaded into a relational database using the Chado schema (as at PomBase) or alternative schemas.ma (as at PomBase) or alternative schemas. +, Curate GO annotations for S. pombe + and Curate GO annotations for proteins using UniProtKB identifiers +
Has development statusactive +
Has input formatOBO +, gene/protein IDs + and literature +
Has licenceGPL3 +
Has logoCantoTextLogo.png +
Has output formatJSON + and GAF +
Has software maturity statusmature +
Has support statusactive +
Has titlePomBase Canto + and Generic Gene Ontology Canto +
Has topicCanto +
Interaction typecan save data in +
InteractorCanto +
Interacts withChado +
Is open sourceYes +
Link typewebsite +, demo server +, download +, documentation + and wild URL +
Release date1 November 2013 +
Tool functionality or classificationliterature curation +, functional annotation + and community annotation +
Written in languagePerl +
Has subobjectThis property is a special property in this wiki.Canto#http://curation.pombase.org/ +, Canto#http://curation.pombase.org/demo +, Canto#https://github.com/pombase/canto +, Canto#https://github.com/pombase/canto/blob/master/documentation/canto_admin.md +, Canto#http://curation.pombase.org/pombe +, Canto#http://curation.pombase.org/uniprot + and Canto +