Difference between revisions of "CMap/tool data"

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<noinclude>
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This page stores the data that populates the [[CMap]] wiki page.
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</noinclude>
 
{{ {{{template}}}
 
{{ {{{template}}}
 
| name = CMap
 
| name = CMap
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| support = active
 
| support = active
 
| type = Genome Visualization & Editing
 
| type = Genome Visualization & Editing
| os_web = true
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| platform = web
| logo = CMapLogo.png
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| logo = CMapLogo-horiz.png
 
| home = http://gmod.org/wiki/CMap
 
| home = http://gmod.org/wiki/CMap
 
| about = A browser-based tool for the visual comparison of various maps (sequence, genetic, etc.) from any number of species. The CMap package also includes tools for curating map data.  
 
| about = A browser-based tool for the visual comparison of various maps (sequence, genetic, etc.) from any number of species. The CMap package also includes tools for curating map data.  
 
| screenshot = Here are some sample maps from the [http://www.gramene.org/ Gramene Project].  See also [http://www.gramene.org/cmap/entry.html other Gramene views].
 
| screenshot = Here are some sample maps from the [http://www.gramene.org/ Gramene Project].  See also [http://www.gramene.org/cmap/entry.html other Gramene views].
  
 
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<gallery widths=200px>
[[Image:Cmap_sample1.jpg|thumb|left|200px]] [[Image:Cmap_sample2.jpg|thumb|left|200px]] [[Image:Cmap_sample3.jpg|thumb|left|200px]]
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File:Cmap_sample1.jpg
 
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File:Cmap_sample2.jpg
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File:Cmap_sample3.jpg
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</gallery>
 
| public_server = http://www.gramene.org/cmap
 
| public_server = http://www.gramene.org/cmap
 
| dl =  
 
| dl =  
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Also see the [[CMap FAQ]].
 
Also see the [[CMap FAQ]].
  
| papers = 19648141
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| papers = *CMap 1.01: a comparative mapping application for the Internet. <ref>PMID:19648141</ref>
 
| presentations =  
 
| presentations =  
 
* [[File:CMapGenomeInformatics2009.pdf|Genome Visualization and Comparison using CMap and Circos]], poster from [http://meetings.cshl.edu/meetings/info09.shtml Genome Informatics 2009]
 
* [[File:CMapGenomeInformatics2009.pdf|Genome Visualization and Comparison using CMap and Circos]], poster from [http://meetings.cshl.edu/meetings/info09.shtml Genome Informatics 2009]
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| tutorials =  
 
| tutorials =  
*[http://www.gramene.org/tutorials/cmap.html Tutorial @ Gramene]
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;[http://www.gramene.org/tutorials/cmap.html Tutorial @ Gramene]
  
 
| wild_urls = The following is a partial list of groups using CMap.
 
| wild_urls = The following is a partial list of groups using CMap.
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| mail = {{MailingListsFor|CMap}}
 
| mail = {{MailingListsFor|CMap}}
 
| logo_info = The CMap logo was created by Kathy Bracken, a participant in the [[Spring 2010 Logo Program]], while a design student at [http://www.linn-benton.edu Linn-Benton Community College].
 
| logo_info = The CMap logo was created by Kathy Bracken, a participant in the [[Spring 2010 Logo Program]], while a design student at [http://www.linn-benton.edu Linn-Benton Community College].
| dev_ppl = Lincoln Stein, Doreen Ware, [[User:Faga|Ben Faga]], [mailto:kclark@cshl.edu|Ken Youens-Clark]
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| dev_ppl = Lincoln Stein, Doreen Ware, [[User:Faga|Ben Faga]], [mailto:kclark@cshl.edu Ken Youens-Clark]
 
| dev_status = No development in several years.  Future development at Gramene.org hopes to replace CMap with a lighter, Javascript version.
 
| dev_status = No development in several years.  Future development at Gramene.org hopes to replace CMap with a lighter, Javascript version.
 
| contact_email = Ken Youens-Clark <kclark@cshl.edu>
 
| contact_email = Ken Youens-Clark <kclark@cshl.edu>
| formats =  
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| input =
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| output =  
 
| see_also = [[CMap3D]]
 
| see_also = [[CMap3D]]
 
 
| demo_server =  
 
| demo_server =  
 
| survey_link = CMap
 
| survey_link = CMap
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| release date = 2002
 
| more_info =  
 
| more_info =  
 
}}
 
}}
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[[Category:GMOD Components]]
 
[[Category:GMOD Components]]
 
[[Category:CMap]]
 
[[Category:CMap]]
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[[Category:Tool data]]

Latest revision as of 18:31, 10 September 2013


This page stores the data that populates the CMap wiki page.


{{ {{{template}}} | name = CMap | full_name = | status = mature | dev = inactive | support = active | type = Genome Visualization & Editing | platform = web | logo = CMapLogo-horiz.png | home = http://gmod.org/wiki/CMap | about = A browser-based tool for the visual comparison of various maps (sequence, genetic, etc.) from any number of species. The CMap package also includes tools for curating map data. | screenshot = Here are some sample maps from the Gramene Project. See also other Gramene views.

| public_server = http://www.gramene.org/cmap | dl = | dl_url = http://sourceforge.net/projects/gmod/files/cmap/ | dl_src = | dl_src_url = https://gmod.svn.sourceforge.net/svnroot/gmod/cmap | dl_dev = | dl_dev_url = | getting_started_preamble = | req =

  • Perl 5.6.0 or higher
  • A web server with CGI capabilites (e.g., Apache 1.x or 2.x)
  • A relational database, e.g. MySQL (4.0+), Sybase Adaptive Server Enterprise, PostgreSQL, SQLite or Oracle (9.x)
  • libgd (2.0.28 or higher) and [GD GD.pm (2.16 or higher)]
  • Various Perl modules available on CPAN

| install = | config = | doc =

Also see the CMap FAQ.

| papers = *CMap 1.01: a comparative mapping application for the Internet. [1] | presentations =

| tutorials =

Tutorial @ Gramene

| wild_urls = The following is a partial list of groups using CMap.

| mail =

Mailing List Link Description Archive(s)
CMap gmod-cmap Discussion of CMap development, installation problems, etc. Nabble (2010/05+), Sourceforge
gmod-cmap-commits Notification of SVN activity for CMap. Sourceforge

| logo_info = The CMap logo was created by Kathy Bracken, a participant in the Spring 2010 Logo Program, while a design student at Linn-Benton Community College. | dev_ppl = Lincoln Stein, Doreen Ware, Ben Faga, Ken Youens-Clark | dev_status = No development in several years. Future development at Gramene.org hopes to replace CMap with a lighter, Javascript version. | contact_email = Ken Youens-Clark <kclark@cshl.edu> | input = | output = | see_also = CMap3D | demo_server = | survey_link = CMap | release date = 2002 | more_info = }}
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