Difference between revisions of "CMap"
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* [http://www.gramene.org/cmap Gramene]: Comparative mapping resource for grasses (plant) | * [http://www.gramene.org/cmap Gramene]: Comparative mapping resource for grasses (plant) |
Revision as of 20:56, 24 April 2007
Contents
Description
CMap is a web-based tool that allows users to view comparisons of genetic and physical maps. The package also includes tools for curating map data.
Requirements
- Perl 5.6.0 or higher
- A web server with CGI capabilites (e.g., Apache 1.x or 2.x)
- A relational database, e.g. MySQL (4.0+), Sybase Adaptive Server Enterprise, PostgreSQL, SQLite or Oracle (9.x)
- libgd 2.0.28 and GD.pm 2.15
- Various Perl modules available on CPAN
Documentation
- /cmap/README
- /cmap/Changes
- /cmap/INSTALL.pod
- /cmap/docs/ADMINISTRATION.pod
- /cmap/docs/CODE_OVERVIEW.pod
- /cmap/TODO
- /cmap/docs/attributes-and-xrefs.pod
- /cmap/docs/cmap-schema-desc.html
- User Tutorial
- CMAP Tutorial at Texas A & M
Also see the CMap FAQ.
Downloads
Demo & Screenshots
See the Gramene Project for a production version.
Screenshots
Here are some sample maps from the Gramene Project.
Sites Using CMap
The following is a partial list of groups using CMap.
- Gramene: Comparative mapping resource for grasses (plant)
- NCGR's Legume Information System: A publicly accessible legume resource that will integrate genetic and molecular data from multiple legume species and enable cross-species comparisons
- BeeBase: The Honey Bee genome database
- BASC: Brassica database
- GrainGenes
- MAGI
- Genome Database for Rosaceae
- Cotton Microsatellite Database
- SCRI Plant Bioinformatics Group
- Pristionchus pacificus Physical Map
- Comparitive Location Database
- Soybean Breeders Toolbox
- Composite Wheat Map
- PeanutMap
Code
Patches
- See the SourceForge Patch List.
Mailing List
- gmod-cmap@lists.sourceforge.net: Discussion of development, installation problems, etc.
- gmod-cmap-commits@lists.sourceforge.net: Notification of CVS activity
- Subscribe to gmod-cmap
- Archives