Difference between revisions of "CMap"
From GMOD
(New page: ; '''Description'''<br /> : CMap is a web-based tool that allows users to view comparisons of genetic and physical maps. The package also includes tools for curating map data. ; '''Demo'...) |
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− | * [[ | + | * [[Changes]] |
− | * [[ | + | * [[INSTALL]] |
− | * [[ | + | * [[ADMINISTRATION]] |
− | * [[ | + | * [[CODE_OVERVIEW]] |
− | * [[ | + | * [[TODO]] |
− | * [[ | + | * [[Attributes and Cross-references]] |
− | * [[ | + | * [[Schema Description]] |
* [http://dev.gramene.org/cmap/tutorial User Tutorial] | * [http://dev.gramene.org/cmap/tutorial User Tutorial] | ||
* [http://sourceforge.net/tracker/?func=browse&group_id=27707&atid=511220 SourceForge CMap bug tracker] | * [http://sourceforge.net/tracker/?func=browse&group_id=27707&atid=511220 SourceForge CMap bug tracker] | ||
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− | [[ | + | [[[[Image:cmap_sample1t.jpg]]]] |
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− | [[ | + | [[[[Image:cmap_sample2t.jpg]]]] |
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− | * [[ | + | * [[ gmod-cmap@lists.sourceforge.net]]<nowiki>: Discussion of development, installation problems, etc. </nowiki> |
− | * [[ | + | * [[ gmod-cmap-commits@lists.sourceforge.net]]<nowiki>: Notification of CVS activity</nowiki> |
* [http://lists.sourceforge.net/lists/listinfo/gmod-cmap Subscribe] | * [http://lists.sourceforge.net/lists/listinfo/gmod-cmap Subscribe] | ||
* [http://sourceforge.net/mailarchive/forum.php?forum_id=11620 Archives] | * [http://sourceforge.net/mailarchive/forum.php?forum_id=11620 Archives] | ||
; '''Contact'''<br /> | ; '''Contact'''<br /> | ||
− | : [[ | + | : [[Ken Youens-Clark]].<br /> |
− | : [[ | + | : [[Ben Faga]]. |
Revision as of 18:39, 25 January 2007
- Description
- CMap is a web-based tool that allows users to view comparisons of genetic and physical maps. The package also includes tools for curating map data.
- Demo
- See the Gramene Project for a production version.
- Requirements
- Perl 5.6.0 or higher
- A web server with CGI capabilites (e.g., Apache 1.x or 2.x)
- A relational database, e.g. MySQL (4.0+), Sybase Adaptive Server Enterprise, PostgreSQL, SQLite or Oracle (9.x)
- libgd 2.0.28 and GD.pm 2.15
- Various Perl modules available on CPAN
- Documentation
- Changes
- INSTALL
- ADMINISTRATION
- CODE_OVERVIEW
- TODO
- Attributes and Cross-references
- Schema Description
- User Tutorial
- SourceForge CMap bug tracker
- Downloads
- From SourceForge.
- Screenshots
- Here are some sample maps from the Gramene Project. Click to view a larger version.
- Sites Using CMap
- Gramene: Comparative mapping resource for grasses (plant)
- NCGR's Legume Information System: a publicly accessible legume resource that will integrate genetic and molecular data from multiple legume species and enable cross-species comparisons
- BeeBase: The honey bee genome database
- BASC: Brassica database
- Code
- Patches
- See the SourceForge Patch List.
- Mailing List
- gmod-cmap@lists.sourceforge.net: Discussion of development, installation problems, etc.
- gmod-cmap-commits@lists.sourceforge.net: Notification of CVS activity
- Subscribe
- Archives
- Contact
- Ken Youens-Clark.
- Ben Faga.
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