BioMart
From GMOD
Revision as of 18:42, 25 January 2007 by 165.124.152.78 (Talk)
- Description
- BioMart is a robust, query-oriented data integration system, based on distributed data warehousing ideas. The system can be applied to a single or multiple databases. It supports scalable large scale querying of individual databases as well as query-chaining between them. All datasources in the system comply with the BioMart data model - a simple, query optimised database schema. The system consists of database schema specification, administration tools for deploying and configuring mart-spec databases and data access software, which includes web and standalone interfaces. The BioMart suite is still under developement.
- Demo & Screenshots
- The BioMart web interface at EBI can be found here. For Ensembl implemetation look here. The screenshots of standalone interfaces and admin tools can be found here
- Requirements
- The requirements will differ dependent on which part of the BioMart suite you want to install. For more details look here
- Documentation
- The project documentation is still scanty but for pointers go to BioMart home
- Contact
- The contact details can be found here.
- Downloads
- The download/installation instructions can be found here
Facts about "BioMart"RDF feed
Available on platform | linux +, unix +, os x +, windows + and web + |
Has URL | http://www.biomart.org/download.html +, http://www.biomart.org/ + and http://www.biomart.org/community.html + |
Has description | Links to BioMart installations in the wild + and BioMart is a freely available, open source … BioMart is a freely available, open source, federated database system that provides unified access to disparate, geographically distributed data sources. It is designed to be data agnostic and platform independent, such that existing databases can easily be incorporated into the BioMart framework.e incorporated into the BioMart framework. + |
Has development status | active + |
Has input format | Any data that can be stored in the relational database + |
Has licence | LGPL + |
Has logo | Biomart250.png + |
Has output format | APIs: REST/SOAP +, JAVA + and SPARQL + |
Has software maturity status | mature + |
Has support status | active + |
Has title | BioMart user community + |
Has topic | BioMart + |
Interaction type | provides data for + |
Interactor | BioMart + |
Interacts with | GBrowse + |
Is open source | Yes + |
Link type | download +, website + and wild URL + |
Release date | 1 January 2001 + |
Tool functionality or classification | Community Annotation +, Database schema +, Database tools +, Genome Annotation +, Middleware +, Tool Integration + and Data federation software + |
Has subobjectThis property is a special property in this wiki. | BioMart#http://www.biomart.org/download.html +, BioMart#http://www.biomart.org/ +, BioMart#http://www.biomart.org/community.html + and BioMart + |