BioMart

From GMOD
Revision as of 22:24, 26 May 2010 by Clements (Talk | contribs)

Jump to: navigation, search

__NOTITLE__

{{#icon: Biomart250.png|BioMart||http://www.biomart.org/}}


Status
  • Mature release
  • Active development
  • Active support
Resources

BioMart is a robust, query-oriented data integration system, based on distributed data warehousing ideas. The system can be applied to a single or multiple databases. It supports scalable large scale querying of individual databases as well as query-chaining between them. All datasources in the system comply with the BioMart data model - a simple, query optimised database schema. The system consists of database schema specification, administration tools for deploying and configuring mart-spec databases and data access software, which includes web and standalone interfaces.


Demo & Screenshots

The BioMart web interface at OICR can be found here. For Ensembl implemetation look here. The screenshots of standalone interfaces and admin tools can be found here


Requirements

The requirements will differ dependent on which part of the BioMart suite you want to install. For more details look http://www.biomart.org/install-overview.html


Documentation

How to Load a Chado Database into BioMart

A detailed document on how to load a Chado database into BioMart was written by Aminah Olivia KELIET, Joëlle Amselem, Sandra DEROZIE, and Delphine Steinbach, all of INRA URGI. This document is available in PDF and Microsoft Word formats.

Contact: Aminah Olivia KELIET <aminah-olivia.keliet@versailles.inra.fr> if you have specific questions.

Note: the eventual plan is to wikify this document.

Presentations

Mailing Lists

Mailing List Link Description Archive(s)
BioMart announce BioMart announcements mailing list Nabble (2010/06+)
users BioMart users, developers, code and installation Nabble (2010/06+)

Downloads

The download/installation instructions can be found http://www.biomart.org/install-overview.html