Bio::Chado::Schema

Bio::Chado::Schema is a standard DBIx::Class layer for Chado, in Perl. DBIx::Class is an object-relational mapping system similar to other ORMs in other languages, such as Python's SQLAlchemy and Java's Hibernate.

Bio::Chado::Schema is still in an early stage of development, please consider contributing to the project. See the Development section below.

Bio::Chado::Schema is a standard set of Perl modules that should work with any database supported by DBIx::Class. So far, it has been used successfully with Chado schemas running on both PostgreSQL and Oracle. Please try it out and report back to the mailing list!

Development

Development of Bio::Chado::Schema uses git, hosted on GitHub: http://github.com/rbuels/bio-chado-schema

To-Do

• Need many more many_to_many relationships throughout.
• Need more compatibility with BioPerl. Thoughts on how best to do this?

Contributors

• Robert Buels (Sol Genomics Network)
• Naama Menda (Sol Genomics Network)
• Aureliano Bombarely (Sol Genomics Network)
• Jonathan Leto (Sol Genomics Network)

Documentation

API Documentation is in Perl POD format, and can be browsed at http://search.cpan.org/dist/Bio-Chado-Schema

Download

Releases of Bio::Chado::Schema are available on CPAN: http://search.cpan.org/dist/Bio-Chado-Schema

Use your preferred CPAN client to install it:

  cpan Bio::Chado::Schema

is often sufficient.

Mailing Lists

	Mailing List Link	Description	Archive(s)
Bio::Chado::Schema	gmod-schema	Use the Chado list (gmod-schema) for all Bio::Chado::Schema questions.	Gmane, Nabble (old), Nabble (new, 2010/05+), Sourceforge