BLAST Graphic Viewer
From GMOD
Revision as of 18:39, 25 January 2007 by 165.124.152.78 (Talk)
- Description
- The BLAST Graphic Viewer provides a graphical visualization of the
regions contained within HSPs relative to the query sequence. This
distribution includes sample databases and a BLAST Search form.
It is a component of the Generic Model Organism Systems Database
project (GMOD.sourceforge.net).
- Demo & Screenshots
- Demo at Stanford
- Requirements
- The Apache web server (http://www.apache.org/)
- Perl 5.005 or higher.
- File::Basename and File::Listing.
- GD and CGI modules.
- Bioperl Bio::Root::IO, Bio::SearchIO, and
Bio::SearchIO::Writer::HTMLResultWriter.
- Currently only supports WU-BLAST
- Documentation
- See SGD BLAST help page
- Contact
- Shuai Weng.
- Downloads
- From SourceForge
Facts about "BLAST Graphic Viewer"RDF feed
| Available on platform | web + |
| Has URL | http://sourceforge.net/projects/gmod/files/blastGraphic/ + and http://www.yeastgenome.org/cgi-bin/blast-sgd.pl + |
| Has description | BLAST Graphic Viewer provides a graphical visualization of the regions contained within HSPs relative to the query sequence. BLAST Graphic Viewer is also known as blastGraphic. + |
| Has development status | inactive + |
| Has input format | FASTA +, GTG + and RAW + |
| Has output format | gapped alignments + and nongapped alignments + |
| Has software maturity status | mature + |
| Has support status | active + |
| Has topic | BLAST Graphic Viewer + |
| Is open source | Yes + |
| Link type | download + and public server + |
| Release date | 2003 + |
| Tool functionality or classification | Sequence Alignment + |
| Written in language | Perl + |
| Has subobjectThis property is a special property in this wiki. | BLAST Graphic Viewer#http://sourceforge.net/projects/gmod/files/blastGraphic/ + and BLAST Graphic Viewer#http://www.yeastgenome.org/cgi-bin/blast-sgd.pl + |
