BLAST Graphic Viewer

From GMOD
Revision as of 18:31, 25 January 2007 by 165.124.152.78 (Talk)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search


Description
The BLAST Graphic Viewer provides a graphical visualization of the
regions contained within HSPs relative to the query sequence. This
distribution includes sample databases and a BLAST Search form.
It is a component of the Generic Model Organism Systems Database
project (GMOD.sourceforge.net).
Demo & Screenshots
Demo at Stanford
Requirements
The Apache web server (http://www.apache.org/)
Perl 5.005 or higher.
File::Basename and File::Listing.
GD and CGI modules.
Bioperl Bio::Root::IO, Bio::SearchIO, and
Bio::SearchIO::Writer::HTMLResultWriter.
Currently only supports WU-BLAST
Documentation
See SGD BLAST help page
Contact
[Shuai Weng].
Downloads
From SourceForge
Facts about "BLAST Graphic Viewer"RDF feed
Available on platformweb +
Has URLhttp://sourceforge.net/projects/gmod/files/blastGraphic/ + and http://www.yeastgenome.org/cgi-bin/blast-sgd.pl +
Has descriptionBLAST Graphic Viewer provides a graphical visualization of the regions contained within HSPs relative to the query sequence. BLAST Graphic Viewer is also known as blastGraphic. +
Has development statusinactive +
Has input formatFASTA +, GTG + and RAW +
Has output formatgapped alignments + and nongapped alignments +
Has software maturity statusmature +
Has support statusactive +
Has topicBLAST Graphic Viewer +
Is open sourceYes +
Link typedownload + and public server +
Release date2003 +
Tool functionality or classificationSequence Alignment +
Written in languagePerl +
Has subobjectThis property is a special property in this wiki.BLAST Graphic Viewer#http://sourceforge.net/projects/gmod/files/blastGraphic/ + and BLAST Graphic Viewer#http://www.yeastgenome.org/cgi-bin/blast-sgd.pl +