Difference between revisions of "BLAST Graphic Viewer"
From GMOD
m (Updating to use semantic template) |
|||
| (4 intermediate revisions by 3 users not shown) | |||
| Line 1: | Line 1: | ||
| − | {{ | + | {{Tool data |
| − | + | |use template=yes | |
| − | + | |name=BLAST Graphic Viewer | |
| − | == | + | |full name= |
| − | + | |status=mature | |
| − | [ | + | |dev=inactive |
| − | + | |support=active | |
| − | == | + | |type=Sequence Alignment |
| − | + | |platform=web | |
| − | * [http://www. | + | |about=BLAST Graphic Viewer provides a graphical visualization of the regions contained within HSPs relative to the query sequence. BLAST Graphic Viewer is also known as blastGraphic. |
| − | + | |gmod date=2005 | |
| − | * Perl 5.005 or higher | + | |release date=2003 |
| − | * Perl modules: | + | |open source=Yes |
| − | + | |licence= | |
| − | + | |language=Perl | |
| − | * BLAST or BLAT applications | + | |input=FASTA, GTG, RAW |
| − | + | |output=gapped alignments, nongapped alignments | |
| − | See the INSTALL file in the | + | |audience= |
| − | + | |logo= | |
| − | == | + | |screenshot= |
| − | + | |mail= | |
| − | + | |contact email=[mailto:sweng@stanford.edu Shuai Weng] | |
| − | + | |integration= | |
| − | = | + | |papers= |
| − | + | |presentations= | |
| − | + | |tutorials= | |
| + | |getting started preamble= | ||
| + | |req=*[http://www.apache.org Apache web server] | ||
| + | *Perl 5.005 or higher | ||
| + | *Perl modules from CPAN: {{CPAN|Bio::GMOD::Blast::Graph}}, Bio::Perl | ||
| + | *BLAST or BLAT applications | ||
| + | |install=See the INSTALL file in the [http://sourceforge.net/projects/gmod/files/blastGraphic/ blastGraphic download] for full details. | ||
| + | |config= | ||
| + | |doc= | ||
| + | |dev ppl= | ||
| + | |dev status= | ||
| + | |dl tracking= | ||
| + | |logo info= | ||
| + | |see also= | ||
| + | |extra= | ||
| + | }} | ||
| + | {{SemanticLink | ||
| + | |linkurl=http://sourceforge.net/projects/gmod/files/blastGraphic/ | ||
| + | |linktype=download | ||
| + | }} | ||
| + | {{SemanticLink | ||
| + | |linkurl=http://www.yeastgenome.org/cgi-bin/blast-sgd.pl | ||
| + | |linktype=public server | ||
| + | }} | ||
[[Category:BLAST]] | [[Category:BLAST]] | ||
[[Category:GMOD Components]] | [[Category:GMOD Components]] | ||
[[Category:SGD]] | [[Category:SGD]] | ||
Latest revision as of 01:59, 4 December 2013
Contents
About BLAST Graphic Viewer
BLAST Graphic Viewer provides a graphical visualization of the regions contained within HSPs relative to the query sequence. BLAST Graphic Viewer is also known as blastGraphic.
Downloads
Using BLAST Graphic Viewer
System Requirements
- Apache web server
- Perl 5.005 or higher
- Perl modules from CPAN: Bio::GMOD::Blast::Graph, Bio::Perl
- BLAST or BLAT applications
Installation
See the INSTALL file in the blastGraphic download for full details.
Contacts and Mailing Lists
More on BLAST Graphic Viewer
Facts about "BLAST Graphic Viewer"RDF feed
| Available on platform | web + |
| Has URL | http://sourceforge.net/projects/gmod/files/blastGraphic/ + and http://www.yeastgenome.org/cgi-bin/blast-sgd.pl + |
| Has description | BLAST Graphic Viewer provides a graphical visualization of the regions contained within HSPs relative to the query sequence. BLAST Graphic Viewer is also known as blastGraphic. + |
| Has development status | inactive + |
| Has input format | FASTA +, GTG + and RAW + |
| Has output format | gapped alignments + and nongapped alignments + |
| Has software maturity status | mature + |
| Has support status | active + |
| Has topic | BLAST Graphic Viewer + |
| Is open source | Yes + |
| Link type | download + and public server + |
| Release date | 2003 + |
| Tool functionality or classification | Sequence Alignment + |
| Written in language | Perl + |
| Has subobjectThis property is a special property in this wiki. | BLAST Graphic Viewer#http://sourceforge.net/projects/gmod/files/blastGraphic/ + and BLAST Graphic Viewer#http://www.yeastgenome.org/cgi-bin/blast-sgd.pl + |
