Difference between revisions of "BA2009"
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− | | | + | | [[File:Ba2009.png|450px|link=http://www.ausbiotech2009.com.au/bia/bia-home|Bioinformatics Australia 2009]] |
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− | < | + | <div style="font-size: 220%; line-height: 120%">'''[http://www.ausbiotech2009.com.au/bia/workshop Database Tools for Biologists]'''</div> |
+ | <div style="font-size: 150%">Pre-Conference GMOD Workshop<br />28 October 2009, 2:00-6:00pm</div> | ||
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+ | A half day, pre-conference GMOD workshop was held at [http://www.ausbiotech2009.com.au/bia/bia-home Bioinformatics Australia 2009 (BA2009)] in Melbourne. The workshop was on Wednesday 28 October 2009, from 2-6pm. | ||
− | + | The workshop introduced the [[Main Page|GMOD project]] and many project [[GMOD Components|components]], and was run by [[User:Clements|Dave Clements]] of the [[GMOD Help Desk]]. | |
− | |||
+ | == Links == | ||
− | + | ; Presentation - Database Tools for Biologists ([ftp://ftp.gmod.org/pub/gmod/Meetings/2009/BA/BA2009GMODWorkshop.pdf PDF], [ftp://ftp.gmod.org/pub/gmod/Meetings/2009/BA/BA2009GMODWorkshop.ppt PowerPoint]) | |
+ | : The presentation slides are available in two formats. The PowerPoint contains a few useful animations. | ||
+ | ; [[GBrowse NGS Tutorial]] | ||
+ | : The worked example demonstrating how to display [[next generation sequencing]] (NGS) data in [[GBrowse]] is now available as a GMOD [[:Category:Tutorials|tutorial]], complete with a starting [[VMware]] image. | ||
− | + | == Agenda == | |
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| '''Visualisation'''<br /> | | '''Visualisation'''<br /> | ||
[[GBrowse]], [[JBrowse]], [[GBrowse_syn]], [[CMap]], other [[Comparative Genomics]] viewers<br> | [[GBrowse]], [[JBrowse]], [[GBrowse_syn]], [[CMap]], other [[Comparative Genomics]] viewers<br> | ||
− | + | Included a detailed GBrowse configuration example, showing some [[Next Generation Sequencing|next generation sequence data]]. | |
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! 3:55 | ! 3:55 | ||
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| style="font-size: 120%" | '''GMOD Project and Community''' | | style="font-size: 120%" | '''GMOD Project and Community''' | ||
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== Sponsor == | == Sponsor == | ||
− | + | [[File:BioplatformsAustraliaLogo.jpg|left|link=http://www.bioplatforms.com/|Bioplatforms Australia]] | |
− | This workshop | + | This workshop was generously sponsored by [http://www.bioplatforms.com/ Bioplatforms Australia], and admission to the workshop was included in the registration for [http://www.ausbiotech2009.com.au/bia/bia-home Bioinformatics Australia 2009]. |
=== About Bioplatforms Australia === | === About Bioplatforms Australia === | ||
[http://www.bioplatforms.com/ Bioplatforms Australia] is a national body that supports Australian life science research through major investments in state-of-the-art platform technologies and by providing specialist services in genomics, proteomics, metabolomics and bioinformatics. Bioplatforms Australia represents an Australia-wide network of universities and research institutions that boast the nation’s best in biomolecular research capabilities. Its vision is to promote broad access to its infrastructure network and cutting edge expertise as well as enhance research efforts by offering an integrated 'omics' approach. | [http://www.bioplatforms.com/ Bioplatforms Australia] is a national body that supports Australian life science research through major investments in state-of-the-art platform technologies and by providing specialist services in genomics, proteomics, metabolomics and bioinformatics. Bioplatforms Australia represents an Australia-wide network of universities and research institutions that boast the nation’s best in biomolecular research capabilities. Its vision is to promote broad access to its infrastructure network and cutting edge expertise as well as enhance research efforts by offering an integrated 'omics' approach. | ||
+ | |||
+ | == Flier == | ||
+ | |||
+ | [[File:BA2009AdRevisedThumb.png|left|link=Media:BA2009AdRevised.pdf|BA2009 Flier]] | ||
+ | |||
+ | If you work in Australia (or anywhere close to it!) please help spread the word on this workshop by downloading, printing and posting the [[Media:BA2009AdRevised.pdf|workshop announcement]] at your workplace. | ||
+ | |||
+ | [[Category:Education and Outreach]] |
Latest revision as of 18:52, 8 October 2012
Pre-Conference GMOD Workshop
28 October 2009, 2:00-6:00pm |
A half day, pre-conference GMOD workshop was held at Bioinformatics Australia 2009 (BA2009) in Melbourne. The workshop was on Wednesday 28 October 2009, from 2-6pm.
The workshop introduced the GMOD project and many project components, and was run by Dave Clements of the GMOD Help Desk.
Links
- Presentation - Database Tools for Biologists (PDF, PowerPoint)
- The presentation slides are available in two formats. The PowerPoint contains a few useful animations.
- GBrowse NGS Tutorial
- The worked example demonstrating how to display next generation sequencing (NGS) data in GBrowse is now available as a GMOD tutorial, complete with a starting VMware image.
Agenda
Time | Topic |
---|---|
2:00 | Introduction |
2:10 | Software |
2:15 | Visualisation GBrowse, JBrowse, GBrowse_syn, CMap, other Comparative Genomics viewers |
3:55 | Break |
4:05 | Data Management |
4:50 | Annotation MAKER, DIYA, Apollo, Textpresso, Community Annotation, Pipelines and Workflows |
5:35 | GMOD Project and Community |
Sponsor
This workshop was generously sponsored by Bioplatforms Australia, and admission to the workshop was included in the registration for Bioinformatics Australia 2009.
About Bioplatforms Australia
Bioplatforms Australia is a national body that supports Australian life science research through major investments in state-of-the-art platform technologies and by providing specialist services in genomics, proteomics, metabolomics and bioinformatics. Bioplatforms Australia represents an Australia-wide network of universities and research institutions that boast the nation’s best in biomolecular research capabilities. Its vision is to promote broad access to its infrastructure network and cutting edge expertise as well as enhance research efforts by offering an integrated 'omics' approach.
Flier
If you work in Australia (or anywhere close to it!) please help spread the word on this workshop by downloading, printing and posting the workshop announcement at your workplace.