Difference between revisions of "BA2009"

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| {{#icon: Ba2009.png|Bioinformatics Australia 2009|450|http://www.ausbiotech2009.com.au/bia/bia-home}}
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| [[File:Ba2009.png|450px|link=http://www.ausbiotech2009.com.au/bia/bia-home|Bioinformatics Australia 2009]]
 
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<span style="font-size: 200%; line-height: 120%"><b>Pre-Conference GMOD Workshop</b><br />28 October 2009, 2:00-6:00pm</span>
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<div style="font-size: 220%; line-height: 120%">'''[http://www.ausbiotech2009.com.au/bia/workshop Database Tools for Biologists]'''</div>
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<div style="font-size: 150%">Pre-Conference GMOD Workshop<br />28 October 2009, 2:00-6:00pm</div>
 
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A half day, pre-conference GMOD workshop was held at [http://www.ausbiotech2009.com.au/bia/bia-home Bioinformatics Australia 2009 (BA2009)] in Melbourne.  The workshop was on Wednesday 28 October 2009, from 2-6pm.
  
There will be a half day, pre-conference GMOD workshop at [http://www.ausbiotech2009.com.au/bia/bia-home Bioinformatics Australia 2009 (BA2009)] in Melbourne.  The workshop will be held Wednesday 28 October 2009, from 2-6pm.
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The workshop introduced the [[Main Page|GMOD project]] and many project [[GMOD Components|components]], and was run by [[User:Clements|Dave Clements]] of the [[GMOD Help Desk]].
  
The workshop will introduce the [[Main Page|GMOD project]] and many project [[GMOD Components|components]].  The workshop will be run by [[User:Clements|Dave Clements]] of the [[GMOD Help Desk]].
 
  
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== Links ==
  
== Tentative Agenda ==
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; Presentation - Database Tools for Biologists ([ftp://ftp.gmod.org/pub/gmod/Meetings/2009/BA/BA2009GMODWorkshop.pdf PDF], [ftp://ftp.gmod.org/pub/gmod/Meetings/2009/BA/BA2009GMODWorkshop.ppt PowerPoint])
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: The presentation slides are available in two formats. The PowerPoint contains a few useful animations.
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; [[GBrowse NGS Tutorial]]
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: The worked example demonstrating how to display [[next generation sequencing]] (NGS) data in [[GBrowse]] is now available as a GMOD [[:Category:Tutorials|tutorial]], complete with a starting [[VMware]] image.
  
This agenda will be expanded in the coming weeks.
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== Agenda  ==
  
 
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| '''Visualisation'''<br />
 
| '''Visualisation'''<br />
 
[[GBrowse]], [[JBrowse]], [[GBrowse_syn]], [[CMap]], other [[Comparative Genomics]] viewers<br>
 
[[GBrowse]], [[JBrowse]], [[GBrowse_syn]], [[CMap]], other [[Comparative Genomics]] viewers<br>
This will include a detailed GBrowse configuration example, including showing some [[Next Generation Sequencing|next generation sequence data]].
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Included a detailed GBrowse configuration example, showing some [[Next Generation Sequencing|next generation sequence data]].
 
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| style="font-size: 120%" | '''GMOD Project and Community'''
 
| style="font-size: 120%" | '''GMOD Project and Community'''
 
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This is not a hands-on workshop.  However, after the workshop this page will have links to the workshop presentation materials and to a [[VMware]] image containing the system used for [[GBrowse]] worked example.
 
  
 
== Sponsor ==
 
== Sponsor ==
  
{{ImageLeft|BioplatformsAustraliaLogo.jpg|Bioplatforms Australia||http://www.bioplatforms.com/}}
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[[File:BioplatformsAustraliaLogo.jpg|left|link=http://www.bioplatforms.com/|Bioplatforms Australia]]
This workshop is generously sponsored by [http://www.bioplatforms.com/ Bioplatforms Australia], and admission to the workshop is included in the registration for [http://www.ausbiotech2009.com.au/bia/bia-home Bioinformatics Australia 2009].
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This workshop was generously sponsored by [http://www.bioplatforms.com/ Bioplatforms Australia], and admission to the workshop was included in the registration for [http://www.ausbiotech2009.com.au/bia/bia-home Bioinformatics Australia 2009].
  
 
=== About Bioplatforms Australia ===
 
=== About Bioplatforms Australia ===
  
 
[http://www.bioplatforms.com/ Bioplatforms Australia] is a national body that supports Australian life science research through major investments in state-of-the-art platform technologies and by providing specialist services in genomics, proteomics, metabolomics and bioinformatics. Bioplatforms Australia represents an Australia-wide network of universities and research institutions that boast the nation’s best in biomolecular research capabilities. Its vision is to promote broad access to its infrastructure network and cutting edge expertise as well as enhance research efforts by offering an integrated 'omics' approach.
 
[http://www.bioplatforms.com/ Bioplatforms Australia] is a national body that supports Australian life science research through major investments in state-of-the-art platform technologies and by providing specialist services in genomics, proteomics, metabolomics and bioinformatics. Bioplatforms Australia represents an Australia-wide network of universities and research institutions that boast the nation’s best in biomolecular research capabilities. Its vision is to promote broad access to its infrastructure network and cutting edge expertise as well as enhance research efforts by offering an integrated 'omics' approach.
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== Flier ==
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[[File:BA2009AdRevisedThumb.png|left|link=Media:BA2009AdRevised.pdf|BA2009 Flier]]
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If you work in Australia (or anywhere close to it!) please help spread the word on this workshop by downloading, printing and posting the [[Media:BA2009AdRevised.pdf|workshop announcement]] at your workplace.
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[[Category:Education and Outreach]]

Latest revision as of 18:52, 8 October 2012

Bioinformatics Australia 2009

Pre-Conference GMOD Workshop
28 October 2009, 2:00-6:00pm

A half day, pre-conference GMOD workshop was held at Bioinformatics Australia 2009 (BA2009) in Melbourne. The workshop was on Wednesday 28 October 2009, from 2-6pm.

The workshop introduced the GMOD project and many project components, and was run by Dave Clements of the GMOD Help Desk.


Links

Presentation - Database Tools for Biologists (PDF, PowerPoint)
The presentation slides are available in two formats. The PowerPoint contains a few useful animations.
GBrowse NGS Tutorial
The worked example demonstrating how to display next generation sequencing (NGS) data in GBrowse is now available as a GMOD tutorial, complete with a starting VMware image.

Agenda

Time Topic
2:00 Introduction
2:10 Software
2:15 Visualisation

GBrowse, JBrowse, GBrowse_syn, CMap, other Comparative Genomics viewers
Included a detailed GBrowse configuration example, showing some next generation sequence data.

3:55 Break
4:05 Data Management

Chado, BioMart, InterMine, GFF3

4:50 Annotation

MAKER, DIYA, Apollo, Textpresso, Community Annotation, Pipelines and Workflows

5:35 GMOD Project and Community

Bioplatforms Australia

This workshop was generously sponsored by Bioplatforms Australia, and admission to the workshop was included in the registration for Bioinformatics Australia 2009.

About Bioplatforms Australia

Bioplatforms Australia is a national body that supports Australian life science research through major investments in state-of-the-art platform technologies and by providing specialist services in genomics, proteomics, metabolomics and bioinformatics. Bioplatforms Australia represents an Australia-wide network of universities and research institutions that boast the nation’s best in biomolecular research capabilities. Its vision is to promote broad access to its infrastructure network and cutting edge expertise as well as enhance research efforts by offering an integrated 'omics' approach.

Flier

BA2009 Flier

If you work in Australia (or anywhere close to it!) please help spread the word on this workshop by downloading, printing and posting the workshop announcement at your workplace.