Difference between revisions of "Apollo-Chado example database"

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There is an example database with [[bp:GFF|GFF3]] source files, a log of the commands used to build the database, database dumps at a few steps of building the database, and an [[Apollo]] chado-adaptor.xml config file in the [http://gmod.cvs.sourceforge.net/gmod/schema/chado/modules/sequence/apollo-bridge/sample_db/ schema CVS]. From the README:
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There is an example database with [[GFF3]] source files, a log of the commands used to build the database, database dumps at a few steps of building the database, and an [[Apollo]] <tt>chado-adaptor.xml</tt> config file in the {{SF_SVN|sample_dbs|schema SVN}}.
  
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== Getting the sample databases from SVN ==
The sample database that used to be in this directory has been moved to its
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own cvs repository in the gmod cvs, in a repository called 'sample_dbs'.
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Scott Cain
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1/9/07
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==Getting the sample databases from cvs==
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The [[SVN]] repository that has the sample databases in it is called <tt>sample_dbs</tt> and can be checked out following the directions on the [[Subversion]] page.  The repository is quite large (200MB) so it will take a while to download.
 
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The cvs repository that has the sample databases in it is called 'sample_dbs' and can be checked out either anonymously or as a GMOD developer following the directions on the [[CVS_Access]] page.  The repository is quite large (200MB) so it will take a while to download.
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[[Category:Apollo]]
 
[[Category:Apollo]]
 
[[Category:Chado]]
 
[[Category:Chado]]

Latest revision as of 21:08, 15 September 2009

There is an example database with GFF3 source files, a log of the commands used to build the database, database dumps at a few steps of building the database, and an Apollo chado-adaptor.xml config file in the schema SVN.

Getting the sample databases from SVN

The SVN repository that has the sample databases in it is called sample_dbs and can be checked out following the directions on the Subversion page. The repository is quite large (200MB) so it will take a while to download.