Difference between revisions of "Apollo"
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Apollo executables for several platforms (Windows, Mac Os X, Linux, Solaris and generic Unix) are available from the [http://apollo.berkeleybop.org/current/index.html Apollo web site]. | Apollo executables for several platforms (Windows, Mac Os X, Linux, Solaris and generic Unix) are available from the [http://apollo.berkeleybop.org/current/index.html Apollo web site]. | ||
| − | The Apollo source code (which you need only if you want to modify Apollo) is available from | + | The Apollo source code (which you need only if you want to modify Apollo) is available from {{SF_SVN|apollo|SourceForge}} via [[SVN]]. |
==Users== | ==Users== | ||
Revision as of 22:39, 15 September 2009
The Apollo genome editor is a Java-based application for browsing and annotating genomic sequences. There are currently two branches of Apollo, one primarily used for genome browsing and maintained at Ensembl, and the other primarily used for genome annotation and maintained at the Berkeley Bioinformatics and Open Source Projects. The latter is part of the GMOD project.
Contents
Demo & Screenshots
See this screenshot.
Requirements
JDK 1.5 or higher.
Documentation
- Apollo userguide
- A comprehensive guide to installing and using Apollo.
- Apollo: a sequence annotation editor
- The original Apollo publication.
- Apollo tutorials at the Dynamic Gene web site.
- Flash based tutorials on how to use Apollo, using rice as an example. Sections of particular interest are
- Annotation - how to use Apollo
- Resources - how to download sample data and install Apollo on an MS Windows system.
Presentations
- Community Annotation at ParameciumDB - Linda Sperling's presentation on ParameciumDB's Community Annotation process at the November 2007 GMOD Meeting.
- Progress Report - from May 2005 GMOD Meeting
- Future Plans - from April 2004 GMOD Meeting
- Progress Report - from September 2003 GMOD Meeting
- Progress Report - from May 2003 GMOD Meeting
Development / Bug Tracking
Contact
- Ed Lee, elee@lbl.gov
- The Apollo mailing list
Downloads
Apollo executables for several platforms (Windows, Mac Os X, Linux, Solaris and generic Unix) are available from the Apollo web site.
The Apollo source code (which you need only if you want to modify Apollo) is available from SourceForge via SVN.
Users
Off the top of the heads of the attendees of the November 2007 GMOD Meeting. Sorted by version.
- Triggers
- VMWare
- Dolan-Rice
- Crabtree
- Paramecium
- INRA
- SFSU (Smith)
- cXML
- FlyBase
- BovineBase
- VectorBase
