Difference between revisions of "2013 GMOD Summer School"
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Venue: [http://nescent.org NESCent, North Carolina] | Venue: [http://nescent.org NESCent, North Carolina] | ||
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| + | The GMOD Summer School is a five day course that covers the use of several widely used GMOD components in the context of a organism or clade database. The course is taught by members of the projects' development teams. Applications are competitive, since we generally receive many more applications that we have slots. | ||
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| + | <!-- [https://www.nescent.org/courses/2013/gmod/Main_Page GMOD 2013 Summer School wiki] (contents available to course participants only) --> | ||
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| + | ==The Course== | ||
| + | |||
| + | The summer school comprises five days of hands-on courses on GMOD component installation, configuration, and usage. Most sessions are four hours (a half day), and the evenings feature work sessions where the instructors are available to answer questions and help participants use the tools with their data. The instructors on the course are experienced component developers and GMOD project staff. | ||
| + | |||
| + | <!-- | ||
| + | The course covers the following topics in detail: | ||
| + | {| class="wikitable" | ||
| + | ! Topic | ||
| + | ! Tutorial | ||
| + | ! Instructor | ||
| + | ! Affiliation; GMOD role | ||
| + | |- | ||
| + | | Amazon Web Services set up || [[AWS_walkthrough|Tutorial]] || [[User:Scott|Scott Cain]] || [http://oicr.on.ca/ Ontario Institute for Cancer Research]<br>GMOD Project Coordinator; [[Chado]], [[GBrowse]] | ||
| + | |- | ||
| + | | [[Chado]] || [[Chado Tutorial 2012|Tutorial]] || [[User:Scott|Scott Cain]] || [http://oicr.on.ca/ Ontario Institute for Cancer Research]<br>GMOD Project Coordinator; [[Chado]], [[GBrowse]] | ||
| + | |- | ||
| + | | [[Galaxy]] || [[Galaxy Tutorial 2012|Tutorial]] || [[User:Clements|Dave Clements]] || [http://galaxyproject.org/ Galaxy Project], [http://emory.edu/ Emory University]<br>[[Galaxy]] | ||
| + | |- | ||
| + | | [[GBrowse]] || [[GBrowse Tutorial 2012|Tutorial]] || [[User:Scott|Scott Cain]] || [http://oicr.on.ca/ Ontario Institute for Cancer Research]<br>GMOD Project Coordinator; [[Chado]], [[GBrowse]] | ||
| + | |- | ||
| + | | [[GBrowse syn]] || [[GBrowse_syn Tutorial 2012|Tutorial]] || [[User:Mckays|Sheldon McKay]] || [http://iplantcollaborative.org iPlant Collaborative], [http://www.cshl.edu CSHL]<br>[[GBrowse_syn]], [[GBrowse]] | ||
| + | |- | ||
| + | | [[GFF3]] || [[GFF Tutorial 2012|Tutorial]] || [[User:Scott|Scott Cain]] || [http://oicr.on.ca/ Ontario Institute for Cancer Research]<br>GMOD Project Coordinator; [[Chado]], [[GBrowse]] | ||
| + | |- | ||
| + | | [[JBrowse]] || [[JBrowse Tutorial 2012|Tutorial]] || [[User:RBuels|Robert Buels]] || [http://berkeley.edu University of California, Berkeley]<br>[[JBrowse]] | ||
| + | |- | ||
| + | | [[MAKER]] || [[MAKER Tutorial 2012|Tutorial]] || [[User:Bmoore|Barry Moore]] || [http://utah.edu University of Utah]<br>[[MAKER]] | ||
| + | |- | ||
| + | | [[SOBA]] || [[SOBA Tutorial 2012|Tutorial]] || [[User:Bmoore|Barry Moore]] || [http://www.utah.edu University of Utah]<br>[[MAKER]] | ||
| + | |- | ||
| + | | [[Tripal]] || [[Tripal Tutorial (v1.0)|Tutorial]] || [[User:sficklin|Stephen Ficklin]] || [http://www.wsu.edu Washington State University]<br>[[Tripal]] | ||
| + | |- | ||
| + | | [[WebApollo]] || [[WebApollo Tutorial 2012|Tutorial]] || [[User:Elee|Ed Lee]] || [http://www.berkeleybop.org/ Berkeley Bioinformatics Open-source Projects (BBOP)]<br>[[Apollo]], [[WebApollo]] | ||
| + | |} | ||
| + | --> | ||
| + | |||
| + | ==Course Work== | ||
| + | |||
| + | The 2013 Summer School will use Amazon Web Services to host virtual GMOD instances containing the software and demo data used during the course. See [[Cloud|GMOD in the Cloud]] for more information on the GMOD Amazon Machine Images available to the public. The tutorials used on the course will be available on this wiki for interested persons to work through. | ||
| + | |||
| + | <!-- GMOD thanks the generous grant from the Amazon [http://aws.amazon.com/grants/ AWS in Education program], which provided free compute time on Amazon Web Services for the course tutors and participants. --> | ||
[[Category:GMOD Schools]] | [[Category:GMOD Schools]] | ||
[[Category:Tutorials]] | [[Category:Tutorials]] | ||
| + | [[Category:Education and Outreach]] | ||
Revision as of 21:33, 25 February 2013
Dates: Friday July 19th - Tuesday July 22nd
Venue: NESCent, North Carolina
The GMOD Summer School is a five day course that covers the use of several widely used GMOD components in the context of a organism or clade database. The course is taught by members of the projects' development teams. Applications are competitive, since we generally receive many more applications that we have slots.
The Course
The summer school comprises five days of hands-on courses on GMOD component installation, configuration, and usage. Most sessions are four hours (a half day), and the evenings feature work sessions where the instructors are available to answer questions and help participants use the tools with their data. The instructors on the course are experienced component developers and GMOD project staff.
Course Work
The 2013 Summer School will use Amazon Web Services to host virtual GMOD instances containing the software and demo data used during the course. See GMOD in the Cloud for more information on the GMOD Amazon Machine Images available to the public. The tutorials used on the course will be available on this wiki for interested persons to work through.
